RNA–Protein interactions for RNA: ENST00000331450.9

LRRC28-202, Transcript of leucine rich repeat containing 28, humanhuman

TSL 1 (best) BASIC

Gene LRRC28, Length 752 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-202ENST00000331450 KRT28Q7Z3Y7 464 aa22.32■■□□□ 1.16
LRRC28-202ENST00000331450 BRD4O60885 1362 aaPredicted RBP22.32■■□□□ 1.16
LRRC28-202ENST00000331450 MED1Q15648 1581 aaPredicted RBP22.31■■□□□ 1.16
LRRC28-202ENST00000331450 TMC1Q8TDI8 760 aa22.31■■□□□ 1.16
LRRC28-202ENST00000331450 KIF20BQ96Q89 1820 aa22.3■■□□□ 1.16
LRRC28-202ENST00000331450 PSME1Q06323 249 aa22.3■■□□□ 1.16
LRRC28-202ENST00000331450 ILDR1Q86SU0 546 aaPredicted RBP22.3■■□□□ 1.16
LRRC28-202ENST00000331450 KTN1Q86UP2 1357 aaKnown RBP22.29■■□□□ 1.16
LRRC28-202ENST00000331450 EDC4Q6P2E9 1401 aaKnown RBP22.29■■□□□ 1.16
LRRC28-202ENST00000331450 SPATA31A3Q5VYP0 1347 aa22.29■■□□□ 1.16
LRRC28-202ENST00000331450 PNPLA6Q8IY17 1366 aa22.28■■□□□ 1.16
LRRC28-202ENST00000331450 ZNF692Q9BU19 519 aaPredicted RBP22.28■■□□□ 1.16
LRRC28-202ENST00000331450 TERF2IPQ9NYB0 399 aa22.28■■□□□ 1.16
LRRC28-202ENST00000331450 PHRF1Q9P1Y6 1649 aaKnown RBP22.28■■□□□ 1.16
LRRC28-202ENST00000331450 LRRC59Q96AG4 307 aaKnown RBP22.27■■□□□ 1.16
LRRC28-202ENST00000331450 JCADQ9P266 1359 aa22.26■■□□□ 1.15
LRRC28-202ENST00000331450 HDGFL2Q7Z4V5 671 aaPredicted RBP22.26■■□□□ 1.15
LRRC28-202ENST00000331450 POLR3GLQ9BT43 218 aa22.26■■□□□ 1.15
LRRC28-202ENST00000331450 ANKRD26Q9UPS8 1709 aa22.24■■□□□ 1.15
LRRC28-202ENST00000331450 ARHGEF10O15013 1369 aa22.24■■□□□ 1.15
LRRC28-202ENST00000331450 TTC21BQ7Z4L5 1316 aa22.22■■□□□ 1.15
LRRC28-202ENST00000331450 TTC21AQ8NDW8 1320 aa22.22■■□□□ 1.15
LRRC28-202ENST00000331450 CARD14Q9BXL6 1004 aa22.2■■□□□ 1.14
LRRC28-202ENST00000331450 NSD3Q9BZ95 1437 aa22.2■■□□□ 1.14
LRRC28-202ENST00000331450 PAK3O75914 559 aaPredicted RBP22.19■■□□□ 1.14
LRRC28-202ENST00000331450 SLIT3O75094 1523 aa22.19■■□□□ 1.14
LRRC28-202ENST00000331450 LRP6O75581 1613 aa22.17■■□□□ 1.14
LRRC28-202ENST00000331450 OVOS2A0A0J9YW53 1432 aa22.16■■□□□ 1.14
LRRC28-202ENST00000331450 OVOS2Q6IE36 1432 aa22.16■■□□□ 1.14
LRRC28-202ENST00000331450 USP31Q70CQ4 1352 aa22.16■■□□□ 1.14
LRRC28-202ENST00000331450 SPATA31A6Q5VVP1 1343 aa22.16■■□□□ 1.14
LRRC28-202ENST00000331450 PANK3Q9H999 370 aa22.16■■□□□ 1.14
LRRC28-202ENST00000331450 USP19O94966 1318 aa22.15■■□□□ 1.14
LRRC28-202ENST00000331450 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.14■■□□□ 1.13
LRRC28-202ENST00000331450 ABTB2Q8N961 1025 aa22.14■■□□□ 1.13
LRRC28-202ENST00000331450 LMOD2Q6P5Q4 547 aa22.13■■□□□ 1.13
LRRC28-202ENST00000331450 NME9Q86XW9 330 aa22.13■■□□□ 1.13
LRRC28-202ENST00000331450 NFAT5O94916 1531 aa22.12■■□□□ 1.13
LRRC28-202ENST00000331450 ZNF316A6NFI3 1004 aaPredicted RBP22.12■■□□□ 1.13
LRRC28-202ENST00000331450 LTN1O94822 1766 aa22.1■■□□□ 1.13
LRRC28-202ENST00000331450 PER1O15534 1290 aaPredicted RBP22.1■■□□□ 1.13
LRRC28-202ENST00000331450 NUTM2GQ5VZR2 741 aa22.1■■□□□ 1.13
LRRC28-202ENST00000331450 NLRP13Q86W25 1043 aa22.1■■□□□ 1.13
LRRC28-202ENST00000331450 FYB1O15117 783 aa22.09■■□□□ 1.13
LRRC28-202ENST00000331450 NLRP6P59044 892 aa22.09■■□□□ 1.13
LRRC28-202ENST00000331450 ZRANB1Q9UGI0 708 aa22.09■■□□□ 1.13
LRRC28-202ENST00000331450 PLCH1Q4KWH8 1693 aa22.09■■□□□ 1.13
LRRC28-202ENST00000331450 CGNL1Q0VF96 1302 aa22.08■■□□□ 1.13
LRRC28-202ENST00000331450 CABLES1Q8TDN4 633 aa22.08■■□□□ 1.13
LRRC28-202ENST00000331450 NSD2O96028 1365 aa22.07■■□□□ 1.12
LRRC28-202ENST00000331450 COL14A1Q05707 1796 aaKnown RBP22.07■■□□□ 1.12
LRRC28-202ENST00000331450 LMO7Q8WWI1 1683 aa22.06■■□□□ 1.12
LRRC28-202ENST00000331450 COL18A1P39060 1754 aa22.05■■□□□ 1.12
LRRC28-202ENST00000331450 NWD2Q9ULI1 1742 aa22.05■■□□□ 1.12
LRRC28-202ENST00000331450 NPC1L1Q9UHC9 1359 aa22.04■■□□□ 1.12
LRRC28-202ENST00000331450 AMER1Q5JTC6 1135 aaPredicted RBP22.04■■□□□ 1.12
LRRC28-202ENST00000331450 GGNBP2Q9H3C7 697 aa22.04■■□□□ 1.12
LRRC28-202ENST00000331450 NUTM2BA6NNL0 878 aaPredicted RBP22.03■■□□□ 1.12
LRRC28-202ENST00000331450 NUTM2EB1AL46 878 aaPredicted RBP22.03■■□□□ 1.12
LRRC28-202ENST00000331450 NUTM2AQ8IVF1 878 aaPredicted RBP22.03■■□□□ 1.12
LRRC28-202ENST00000331450 KNSTRNQ9Y448 316 aa22.03■■□□□ 1.12
LRRC28-202ENST00000331450 NRAPQ86VF7 1730 aa22.03■■□□□ 1.12
LRRC28-202ENST00000331450 CPDO75976 1380 aa22.02■■□□□ 1.12
LRRC28-202ENST00000331450 ABCC6O95255 1503 aa22.02■■□□□ 1.12
LRRC28-202ENST00000331450 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.02■■□□□ 1.12
LRRC28-202ENST00000331450 PLEKHG5O94827 1062 aa22.01■■□□□ 1.11
LRRC28-202ENST00000331450 GCP02774 474 aa22.01■■□□□ 1.11
LRRC28-202ENST00000331450 COG3Q96JB2 828 aa22.01■■□□□ 1.11
LRRC28-202ENST00000331450 RGPD5Q99666 1765 aa22.01■■□□□ 1.11
LRRC28-202ENST00000331450 MAP2P11137 1827 aaKnown RBP22.01■■□□□ 1.11
LRRC28-202ENST00000331450 DDX10Q13206 875 aaKnown RBP22■■□□□ 1.11
LRRC28-202ENST00000331450 KCNH5Q8NCM2 988 aa21.99■■□□□ 1.11
LRRC28-202ENST00000331450 KIAA0232Q92628 1395 aa21.99■■□□□ 1.11
LRRC28-202ENST00000331450 PEAK1Q9H792 1746 aa21.98■■□□□ 1.11
LRRC28-202ENST00000331450 HAP1P54257 671 aaPredicted RBP21.98■■□□□ 1.11
LRRC28-202ENST00000331450 SLIT2O94813 1529 aa21.97■■□□□ 1.11
LRRC28-202ENST00000331450 ADAMTS2O95450 1211 aa21.97■■□□□ 1.11
LRRC28-202ENST00000331450 ZC3H6P61129 1189 aaKnown RBP21.94■■□□□ 1.1
LRRC28-202ENST00000331450 ARHGEF25Q86VW2 580 aa21.94■■□□□ 1.1
LRRC28-202ENST00000331450 AATKQ6ZMQ8 1374 aa21.94■■□□□ 1.1
LRRC28-202ENST00000331450 CAMTA1Q9Y6Y1 1673 aa21.94■■□□□ 1.1
LRRC28-202ENST00000331450 SMG6Q86US8 1419 aaKnown RBP21.92■■□□□ 1.1
LRRC28-202ENST00000331450 FAM83GA6ND36 823 aa21.92■■□□□ 1.1
LRRC28-202ENST00000331450 SOX12O15370 315 aa21.92■■□□□ 1.1
LRRC28-202ENST00000331450 MEX3CQ5U5Q3 659 aaKnown RBP21.92■■□□□ 1.1
LRRC28-202ENST00000331450 PRDM11Q9NQV5 511 aa21.92■■□□□ 1.1
LRRC28-202ENST00000331450 C8orf37Q96NL8 207 aa21.91■■□□□ 1.1
LRRC28-202ENST00000331450 BCL9LQ86UU0 1499 aa21.9■■□□□ 1.1
LRRC28-202ENST00000331450 MAP3K19Q56UN5 1328 aa21.9■■□□□ 1.1
LRRC28-202ENST00000331450 FBLN1P23142 703 aa21.9■■□□□ 1.1
LRRC28-202ENST00000331450 CC2D1BQ5T0F9 858 aaKnown RBP21.9■■□□□ 1.1
LRRC28-202ENST00000331450 FNBP4Q8N3X1 1017 aaPredicted RBP21.9■■□□□ 1.1
LRRC28-202ENST00000331450 FAM208AQ9UK61 1670 aaKnown RBP21.9■■□□□ 1.1
LRRC28-202ENST00000331450 RTL1A6NKG5 1358 aa21.89■■□□□ 1.1
LRRC28-202ENST00000331450 CHRNA2Q15822 529 aa21.89■■□□□ 1.09
LRRC28-202ENST00000331450 MORC1Q86VD1 984 aa21.89■■□□□ 1.09
LRRC28-202ENST00000331450 COL5A2P05997 1499 aaPredicted RBP21.89■■□□□ 1.09
LRRC28-202ENST00000331450 KIF24Q5T7B8 1368 aa21.88■■□□□ 1.09
LRRC28-202ENST00000331450 PARD3Q8TEW0 1356 aa21.88■■□□□ 1.09
LRRC28-202ENST00000331450 AFF2P51816 1311 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms