RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 FBLN1P23142 703 aa19.25■□□□□ 0.67
CLCNKA-201ENST00000331433 PDE3AQ14432 1141 aa19.25■□□□□ 0.67
CLCNKA-201ENST00000331433 BCL2L13Q9BXK5 485 aa19.25■□□□□ 0.67
CLCNKA-201ENST00000331433 COG6Q9Y2V7 657 aa19.25■□□□□ 0.67
CLCNKA-201ENST00000331433 TNRQ92752 1358 aa19.24■□□□□ 0.67
CLCNKA-201ENST00000331433 ATP7BP35670 1465 aa19.23■□□□□ 0.67
CLCNKA-201ENST00000331433 WASLO00401 505 aaPredicted RBP19.23■□□□□ 0.67
CLCNKA-201ENST00000331433 DIAPH1O60610 1272 aaKnown RBP19.23■□□□□ 0.67
CLCNKA-201ENST00000331433 MYH16Q9H6N6 1097 aa19.23■□□□□ 0.67
CLCNKA-201ENST00000331433 TMPOP42166 694 aaKnown RBP19.22■□□□□ 0.67
CLCNKA-201ENST00000331433 NCBP3Q53F19 620 aaKnown RBP19.22■□□□□ 0.67
CLCNKA-201ENST00000331433 MAPK8IP3Q9UPT6 1336 aa19.22■□□□□ 0.67
CLCNKA-201ENST00000331433 PPM1GO15355 546 aaPredicted RBP19.22■□□□□ 0.67
CLCNKA-201ENST00000331433 PNPLA6Q8IY17 1366 aa19.21■□□□□ 0.67
CLCNKA-201ENST00000331433 TSR2Q969E8 191 aaKnown RBP19.21■□□□□ 0.67
CLCNKA-201ENST00000331433 TNNQ9UQP3 1299 aa19.21■□□□□ 0.67
CLCNKA-201ENST00000331433 TRIM35Q9UPQ4 493 aa19.2■□□□□ 0.66
CLCNKA-201ENST00000331433 NCKAP5LQ9HCH0 1330 aa19.2■□□□□ 0.66
CLCNKA-201ENST00000331433 PPIP5K1Q6PFW1 1433 aa19.2■□□□□ 0.66
CLCNKA-201ENST00000331433 IGHDP01880 384 aa19.19■□□□□ 0.66
CLCNKA-201ENST00000331433 CLUAP1Q96AJ1 413 aa19.19■□□□□ 0.66
CLCNKA-201ENST00000331433 POLKQ9UBT6 870 aa19.19■□□□□ 0.66
CLCNKA-201ENST00000331433 RLBP1P12271 317 aa19.18■□□□□ 0.66
CLCNKA-201ENST00000331433 RGS3P49796 1198 aa19.18■□□□□ 0.66
CLCNKA-201ENST00000331433 HDGFP51858 240 aaKnown RBP19.18■□□□□ 0.66
CLCNKA-201ENST00000331433 ZBTB47Q9UFB7 747 aaPredicted RBP19.18■□□□□ 0.66
CLCNKA-201ENST00000331433 TMEM2Q9UHN6 1383 aa19.18■□□□□ 0.66
CLCNKA-201ENST00000331433 NME9Q86XW9 330 aa19.17■□□□□ 0.66
CLCNKA-201ENST00000331433 CPSF1Q10570 1443 aaKnown RBP19.17■□□□□ 0.66
CLCNKA-201ENST00000331433 NUDT16Q96DE0 195 aaKnown RBP19.17■□□□□ 0.66
CLCNKA-201ENST00000331433 ZRANB1Q9UGI0 708 aa19.17■□□□□ 0.66
CLCNKA-201ENST00000331433 UBR1Q8IWV7 1749 aa19.16■□□□□ 0.66
CLCNKA-201ENST00000331433 RIPK4P57078 832 aa19.16■□□□□ 0.66
CLCNKA-201ENST00000331433 MAP2P11137 1827 aaKnown RBP19.15■□□□□ 0.66
CLCNKA-201ENST00000331433 TECPR2O15040 1411 aa19.15■□□□□ 0.66
CLCNKA-201ENST00000331433 EDC4Q6P2E9 1401 aaKnown RBP19.15■□□□□ 0.66
CLCNKA-201ENST00000331433 EXOSC9Q06265 439 aaKnown RBP19.15■□□□□ 0.66
CLCNKA-201ENST00000331433 EMILIN1Q9Y6C2 1016 aa19.15■□□□□ 0.66
CLCNKA-201ENST00000331433 FAM135BQ49AJ0 1406 aa19.15■□□□□ 0.66
CLCNKA-201ENST00000331433 KNDC1Q76NI1 1749 aa19.14■□□□□ 0.66
CLCNKA-201ENST00000331433 LRRC7Q96NW7 1537 aa19.14■□□□□ 0.65
CLCNKA-201ENST00000331433 CEBPAP49715 358 aaPredicted RBP19.13■□□□□ 0.65
CLCNKA-201ENST00000331433 CCDC61Q9Y6R9 512 aa19.13■□□□□ 0.65
CLCNKA-201ENST00000331433 ROBO2Q9HCK4 1378 aa19.13■□□□□ 0.65
CLCNKA-201ENST00000331433 PRKAR2BP31323 418 aa19.13■□□□□ 0.65
CLCNKA-201ENST00000331433 CPS1P31327 1500 aa19.13■□□□□ 0.65
CLCNKA-201ENST00000331433 FCHSD2O94868 740 aa19.12■□□□□ 0.65
CLCNKA-201ENST00000331433 LTKP29376 864 aa19.12■□□□□ 0.65
CLCNKA-201ENST00000331433 SIRT1Q96EB6 747 aa19.12■□□□□ 0.65
CLCNKA-201ENST00000331433 RSPH6AQ9H0K4 717 aa19.12■□□□□ 0.65
CLCNKA-201ENST00000331433 PRR36Q9H6K5 1346 aa19.11■□□□□ 0.65
CLCNKA-201ENST00000331433 ADAMTS13Q76LX8 1427 aa19.11■□□□□ 0.65
CLCNKA-201ENST00000331433 CDC42BPGQ6DT37 1551 aa19.11■□□□□ 0.65
CLCNKA-201ENST00000331433 C8orf34Q49A92 452 aa19.11■□□□□ 0.65
CLCNKA-201ENST00000331433 PNNQ9H307 717 aaKnown RBP19.11■□□□□ 0.65
CLCNKA-201ENST00000331433 HMOX1P09601 288 aa19.11■□□□□ 0.65
CLCNKA-201ENST00000331433 FAM161AQ3B820 660 aa19.11■□□□□ 0.65
CLCNKA-201ENST00000331433 PLPPR3Q6T4P5 718 aa19.1■□□□□ 0.65
CLCNKA-201ENST00000331433 SMC4Q9NTJ3 1288 aa19.1■□□□□ 0.65
CLCNKA-201ENST00000331433 PCDHB15Q9Y5E8 787 aa19.1■□□□□ 0.65
CLCNKA-201ENST00000331433 IL16Q14005 1332 aa19.09■□□□□ 0.65
CLCNKA-201ENST00000331433 CT47B1P0C2W7 299 aaPredicted RBP19.09■□□□□ 0.65
CLCNKA-201ENST00000331433 RRS1Q15050 365 aaKnown RBP19.08■□□□□ 0.65
CLCNKA-201ENST00000331433 ZKSCAN2Q63HK3 967 aa19.08■□□□□ 0.65
CLCNKA-201ENST00000331433 SSH1Q8WYL5 1049 aa19.08■□□□□ 0.65
CLCNKA-201ENST00000331433 COG3Q96JB2 828 aa19.08■□□□□ 0.65
CLCNKA-201ENST00000331433 PHACTR3Q96KR7 559 aa19.08■□□□□ 0.65
CLCNKA-201ENST00000331433 MON2Q7Z3U7 1717 aa19.08■□□□□ 0.64
CLCNKA-201ENST00000331433 NUTM2FA1L443 756 aa19.07■□□□□ 0.64
CLCNKA-201ENST00000331433 NBR1Q14596 966 aa19.07■□□□□ 0.64
CLCNKA-201ENST00000331433 FTSJ3Q8IY81 847 aaKnown RBP19.07■□□□□ 0.64
CLCNKA-201ENST00000331433 SLC26A8Q96RN1 970 aa19.07■□□□□ 0.64
CLCNKA-201ENST00000331433 IL13P35225 146 aa19.06■□□□□ 0.64
CLCNKA-201ENST00000331433 MVPQ14764 893 aaKnown RBP19.06■□□□□ 0.64
CLCNKA-201ENST00000331433 PLEKHG1Q9ULL1 1385 aa19.06■□□□□ 0.64
CLCNKA-201ENST00000331433 ITSN1Q15811 1721 aa19.06■□□□□ 0.64
CLCNKA-201ENST00000331433 NEFMP07197 916 aa19.06■□□□□ 0.64
CLCNKA-201ENST00000331433 DZIP1LQ8IYY4 767 aaKnown RBP19.06■□□□□ 0.64
CLCNKA-201ENST00000331433 AKAP12Q02952 1782 aa19.05■□□□□ 0.64
CLCNKA-201ENST00000331433 AATKQ6ZMQ8 1374 aa19.05■□□□□ 0.64
CLCNKA-201ENST00000331433 CDK12Q9NYV4 1490 aaPredicted RBP19.05■□□□□ 0.64
CLCNKA-201ENST00000331433 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.05■□□□□ 0.64
CLCNKA-201ENST00000331433 TRIM27P14373 513 aa19.05■□□□□ 0.64
CLCNKA-201ENST00000331433 PMFBP1Q8TBY8 1022 aa19.05■□□□□ 0.64
CLCNKA-201ENST00000331433 C3P01024 1663 aa19.04■□□□□ 0.64
CLCNKA-201ENST00000331433 AAMPQ13685 434 aa19.04■□□□□ 0.64
CLCNKA-201ENST00000331433 THUMPD2Q9BTF0 503 aaKnown RBP19.04■□□□□ 0.64
CLCNKA-201ENST00000331433 LAS1LQ9Y4W2 734 aaKnown RBP19.03■□□□□ 0.64
CLCNKA-201ENST00000331433 NFE2L2Q16236 605 aa19.03■□□□□ 0.64
CLCNKA-201ENST00000331433 ZNF692Q9BU19 519 aaPredicted RBP19.03■□□□□ 0.64
CLCNKA-201ENST00000331433 NOB1Q9ULX3 412 aaKnown RBP19.02■□□□□ 0.64
CLCNKA-201ENST00000331433 PTPRUQ92729 1446 aa19.02■□□□□ 0.63
CLCNKA-201ENST00000331433 ATF7IPQ6VMQ6 1270 aa19.01■□□□□ 0.63
CLCNKA-201ENST00000331433 ACEP12821 1306 aa19.01■□□□□ 0.63
CLCNKA-201ENST00000331433 EID1Q9Y6B2 187 aa19■□□□□ 0.63
CLCNKA-201ENST00000331433 ITPRIPQ8IWB1 547 aa18.99■□□□□ 0.63
CLCNKA-201ENST00000331433 TTC21BQ7Z4L5 1316 aa18.99■□□□□ 0.63
CLCNKA-201ENST00000331433 DDRGK1Q96HY6 314 aa18.98■□□□□ 0.63
CLCNKA-201ENST00000331433 RWDD1Q9H446 243 aaPredicted RBP18.98■□□□□ 0.63
CLCNKA-201ENST00000331433 PDZRN3Q9UPQ7 1066 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms