RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 WAPLQ7Z5K2 1190 aa12.34□□□□□ -0.43
CHD3-201ENST00000330494 FSD1Q9BTV5 496 aa12.34□□□□□ -0.43
CHD3-201ENST00000330494 MIS18AQ9NYP9 233 aa12.34□□□□□ -0.43
CHD3-201ENST00000330494 ATP6V1DQ9Y5K8 247 aa12.34□□□□□ -0.43
CHD3-201ENST00000330494 TROQ12816 1431 aaPredicted RBP12.34□□□□□ -0.43
CHD3-201ENST00000330494 DNMBPQ6XZF7 1577 aa12.34□□□□□ -0.43
CHD3-201ENST00000330494 GAS2L2Q8NHY3 880 aa12.34□□□□□ -0.43
CHD3-201ENST00000330494 CABP4P57796 275 aa12.33□□□□□ -0.44
CHD3-201ENST00000330494 RTEL1-TNFRSF6BF6WH68 1400 aa12.33□□□□□ -0.44
CHD3-201ENST00000330494 THEMISQ8N1K5 641 aaPredicted RBP12.33□□□□□ -0.44
CHD3-201ENST00000330494 ZC3H6P61129 1189 aaKnown RBP12.33□□□□□ -0.44
CHD3-201ENST00000330494 SMG6Q86US8 1419 aaKnown RBP12.32□□□□□ -0.44
CHD3-201ENST00000330494 TATP17735 454 aaPredicted RBP12.32□□□□□ -0.44
CHD3-201ENST00000330494 GSE1Q14687 1217 aa12.32□□□□□ -0.44
CHD3-201ENST00000330494 CEP89Q96ST8 783 aa12.32□□□□□ -0.44
CHD3-201ENST00000330494 RRP12Q5JTH9 1297 aaKnown RBP12.32□□□□□ -0.44
CHD3-201ENST00000330494 ZNF771Q7L3S4 317 aaPredicted RBP12.32□□□□□ -0.44
CHD3-201ENST00000330494 PDZRN3Q9UPQ7 1066 aa12.32□□□□□ -0.44
CHD3-201ENST00000330494 HDGFL1Q5TGJ6 251 aa12.32□□□□□ -0.44
CHD3-201ENST00000330494 RALYLQ86SE5 291 aaKnown RBP12.32□□□□□ -0.44
CHD3-201ENST00000330494 TSR1Q2NL82 804 aaKnown RBP12.31□□□□□ -0.44
CHD3-201ENST00000330494 HSP90AB4PQ58FF6 505 aa12.31□□□□□ -0.44
CHD3-201ENST00000330494 CNTROBQ8N137 903 aa12.31□□□□□ -0.44
CHD3-201ENST00000330494 PRXQ9BXM0 1461 aa12.31□□□□□ -0.44
CHD3-201ENST00000330494 ZNF530Q6P9A1 599 aaPredicted RBP12.31□□□□□ -0.44
CHD3-201ENST00000330494 SPINK5Q9NQ38 1064 aaPredicted RBP12.31□□□□□ -0.44
CHD3-201ENST00000330494 PODXL2Q9NZ53 605 aa12.31□□□□□ -0.44
CHD3-201ENST00000330494 STAC3Q96MF2 364 aa12.31□□□□□ -0.44
CHD3-201ENST00000330494 CNNM1Q9NRU3 951 aa12.3□□□□□ -0.44
CHD3-201ENST00000330494 CHMP4CQ96CF2 233 aa12.3□□□□□ -0.44
CHD3-201ENST00000330494 CCDC85AQ96PX6 553 aaPredicted RBP12.3□□□□□ -0.44
CHD3-201ENST00000330494 CDC45O75419 566 aa12.3□□□□□ -0.44
CHD3-201ENST00000330494 CLASRPQ8N2M8 674 aaKnown RBP12.3□□□□□ -0.44
CHD3-201ENST00000330494 EPRSP07814 1512 aaKnown RBP12.3□□□□□ -0.44
CHD3-201ENST00000330494 GOLGA6L1Q8N7Z2 621 aa12.3□□□□□ -0.44
CHD3-201ENST00000330494 THUMPD2Q9BTF0 503 aaKnown RBP12.3□□□□□ -0.44
CHD3-201ENST00000330494 IQGAP2Q13576 1575 aa12.29□□□□□ -0.44
CHD3-201ENST00000330494 IKQ13123 557 aaPredicted RBP12.29□□□□□ -0.44
CHD3-201ENST00000330494 CHMP5Q9NZZ3 219 aa12.29□□□□□ -0.44
CHD3-201ENST00000330494 ATP2B1P20020 1258 aa12.29□□□□□ -0.44
CHD3-201ENST00000330494 PLB1Q6P1J6 1458 aa12.29□□□□□ -0.44
CHD3-201ENST00000330494 NINLQ9Y2I6 1382 aa12.29□□□□□ -0.44
CHD3-201ENST00000330494 USHBP1Q8N6Y0 703 aa12.29□□□□□ -0.44
CHD3-201ENST00000330494 CWC22Q9HCG8 908 aaKnown RBP12.29□□□□□ -0.44
CHD3-201ENST00000330494 TPM2P07951 284 aa12.29□□□□□ -0.44
CHD3-201ENST00000330494 DCTN1Q14203 1278 aa12.29□□□□□ -0.44
CHD3-201ENST00000330494 SKOR2Q2VWA4 1001 aaPredicted RBP12.29□□□□□ -0.44
CHD3-201ENST00000330494 ANKLE2Q86XL3 938 aa12.28□□□□□ -0.44
CHD3-201ENST00000330494 PTPN23Q9H3S7 1636 aa12.28□□□□□ -0.44
CHD3-201ENST00000330494 GNAI2P04899 355 aa12.28□□□□□ -0.44
CHD3-201ENST00000330494 TTC39AQ5SRH9 613 aa12.28□□□□□ -0.44
CHD3-201ENST00000330494 HFM1A2PYH4 1435 aa12.28□□□□□ -0.44
CHD3-201ENST00000330494 CEBPZQ03701 1054 aaKnown RBP12.28□□□□□ -0.44
CHD3-201ENST00000330494 HMGXB3Q12766 1538 aa12.28□□□□□ -0.44
CHD3-201ENST00000330494 STK3Q13188 491 aa12.27□□□□□ -0.44
CHD3-201ENST00000330494 BTBD11A6QL63 1104 aa12.27□□□□□ -0.45
CHD3-201ENST00000330494 NSD3Q9BZ95 1437 aa12.27□□□□□ -0.45
CHD3-201ENST00000330494 PLEKHH2Q8IVE3 1493 aa12.27□□□□□ -0.45
CHD3-201ENST00000330494 GNAI3P08754 354 aa12.27□□□□□ -0.45
CHD3-201ENST00000330494 BICDL1Q6ZP65 573 aa12.27□□□□□ -0.45
CHD3-201ENST00000330494 SETQ01105 290 aaPredicted RBP12.26□□□□□ -0.45
CHD3-201ENST00000330494 CALRP27797 417 aaKnown RBP12.26□□□□□ -0.45
CHD3-201ENST00000330494 CEBPAP49715 358 aaPredicted RBP12.26□□□□□ -0.45
CHD3-201ENST00000330494 KRI1Q8N9T8 703 aaKnown RBP12.26□□□□□ -0.45
CHD3-201ENST00000330494 NUDT16Q96DE0 195 aaKnown RBP12.26□□□□□ -0.45
CHD3-201ENST00000330494 FAM13BQ9NYF5 915 aa12.26□□□□□ -0.45
CHD3-201ENST00000330494 NEK4P51957 841 aa12.26□□□□□ -0.45
CHD3-201ENST00000330494 ATP2B2Q01814 1243 aa12.26□□□□□ -0.45
CHD3-201ENST00000330494 SASS6Q6UVJ0 657 aa12.26□□□□□ -0.45
CHD3-201ENST00000330494 TPM1P09493 284 aa12.26□□□□□ -0.45
CHD3-201ENST00000330494 KAT6BQ8WYB5 2073 aa12.26□□□□□ -0.45
CHD3-201ENST00000330494 PRDM11Q9NQV5 511 aa12.26□□□□□ -0.45
CHD3-201ENST00000330494 ZNF692Q9BU19 519 aaPredicted RBP12.25□□□□□ -0.45
CHD3-201ENST00000330494 SLC52A1Q9NWF4 448 aa12.25□□□□□ -0.45
CHD3-201ENST00000330494 CAMSAP2Q08AD1 1489 aa12.25□□□□□ -0.45
CHD3-201ENST00000330494 SAFBQ15424 915 aaKnown RBP eCLIP12.25□□□□□ -0.45
CHD3-201ENST00000330494 FBXO31Q5XUX0 539 aaPredicted RBP12.25□□□□□ -0.45
CHD3-201ENST00000330494 MCM10Q7L590 875 aa12.25□□□□□ -0.45
CHD3-201ENST00000330494 RNF214Q8ND24 703 aa12.25□□□□□ -0.45
CHD3-201ENST00000330494 CCDC43Q96MW1 224 aaKnown RBP12.25□□□□□ -0.45
CHD3-201ENST00000330494 TBC1D2BQ9UPU7 963 aa12.25□□□□□ -0.45
CHD3-201ENST00000330494 PNISRQ8TF01 805 aaKnown RBP12.24□□□□□ -0.45
CHD3-201ENST00000330494 KIF14Q15058 1648 aa12.24□□□□□ -0.45
CHD3-201ENST00000330494 SPG7Q9UQ90 795 aa12.24□□□□□ -0.45
CHD3-201ENST00000330494 FKBP4Q02790 459 aaKnown RBP eCLIP12.23□□□□□ -0.45
CHD3-201ENST00000330494 IL1RAPL2Q9NP60 686 aa12.23□□□□□ -0.45
CHD3-201ENST00000330494 SKAP1Q86WV1 359 aa12.23□□□□□ -0.45
CHD3-201ENST00000330494 MAGI1Q96QZ7 1491 aaPredicted RBP12.23□□□□□ -0.45
CHD3-201ENST00000330494 NFKBIBQ15653 356 aa12.23□□□□□ -0.45
CHD3-201ENST00000330494 HOMER1Q86YM7 354 aa12.22□□□□□ -0.45
CHD3-201ENST00000330494 CCDC47Q96A33 483 aaKnown RBP12.22□□□□□ -0.45
CHD3-201ENST00000330494 PTCD1O75127 700 aaKnown RBP12.22□□□□□ -0.45
CHD3-201ENST00000330494 NUCB2P80303 420 aa12.22□□□□□ -0.45
CHD3-201ENST00000330494 C11orf95C9JLR9 678 aaPredicted RBP12.22□□□□□ -0.45
CHD3-201ENST00000330494 CD109Q6YHK3 1445 aa12.22□□□□□ -0.45
CHD3-201ENST00000330494 CCDC73Q6ZRK6 1079 aa12.22□□□□□ -0.45
CHD3-201ENST00000330494 FANCIQ9NVI1 1328 aa12.22□□□□□ -0.45
CHD3-201ENST00000330494 UNC13AQ9UPW8 1703 aa12.22□□□□□ -0.45
CHD3-201ENST00000330494 CCDC158Q5M9N0 1113 aa12.22□□□□□ -0.45
CHD3-201ENST00000330494 LRRCC1Q9C099 1032 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms