RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 CCDC27Q2M243 656 aa20.76■□□□□ 0.91
USHBP1-202ENST00000324554 CANXP27824 592 aaKnown RBP20.74■□□□□ 0.91
USHBP1-202ENST00000324554 IGHDP01880 384 aa20.73■□□□□ 0.91
USHBP1-202ENST00000324554 RARSP54136 660 aaKnown RBP20.73■□□□□ 0.91
USHBP1-202ENST00000324554 PANK1Q8TE04 598 aa20.73■□□□□ 0.91
USHBP1-202ENST00000324554 SETD1AO15047 1707 aaKnown RBP20.73■□□□□ 0.91
USHBP1-202ENST00000324554 NCBP3Q53F19 620 aaKnown RBP20.72■□□□□ 0.91
USHBP1-202ENST00000324554 COG6Q9Y2V7 657 aa20.72■□□□□ 0.91
USHBP1-202ENST00000324554 ADGRB2O60241 1585 aa20.72■□□□□ 0.91
USHBP1-202ENST00000324554 U2AF1L5P0DN76 240 aaPredicted RBP20.72■□□□□ 0.91
USHBP1-202ENST00000324554 U2AF1Q01081 240 aaKnown RBP eCLIP20.72■□□□□ 0.91
USHBP1-202ENST00000324554 CLUAP1Q96AJ1 413 aa20.72■□□□□ 0.91
USHBP1-202ENST00000324554 CABP1Q9NZU7 370 aa20.71■□□□□ 0.91
USHBP1-202ENST00000324554 NLRP1Q9C000 1473 aa20.71■□□□□ 0.91
USHBP1-202ENST00000324554 ATAD2Q6PL18 1390 aa20.71■□□□□ 0.91
USHBP1-202ENST00000324554 EID1Q9Y6B2 187 aa20.7■□□□□ 0.91
USHBP1-202ENST00000324554 FRAT1Q92837 279 aaPredicted RBP20.7■□□□□ 0.9
USHBP1-202ENST00000324554 NCKAP5LQ9HCH0 1330 aa20.69■□□□□ 0.9
USHBP1-202ENST00000324554 CD163L1Q9NR16 1453 aa20.69■□□□□ 0.9
USHBP1-202ENST00000324554 GGNBP2Q9H3C7 697 aa20.68■□□□□ 0.9
USHBP1-202ENST00000324554 ADAMTS13Q76LX8 1427 aa20.67■□□□□ 0.9
USHBP1-202ENST00000324554 COL3A1P02461 1466 aaPredicted RBP20.67■□□□□ 0.9
USHBP1-202ENST00000324554 NUTM2FA1L443 756 aa20.67■□□□□ 0.9
USHBP1-202ENST00000324554 RIMS1Q86UR5 1692 aaKnown RBP20.67■□□□□ 0.9
USHBP1-202ENST00000324554 THEMISQ8N1K5 641 aaPredicted RBP20.66■□□□□ 0.9
USHBP1-202ENST00000324554 MYH16Q9H6N6 1097 aa20.66■□□□□ 0.9
USHBP1-202ENST00000324554 ANKRD26Q9UPS8 1709 aa20.66■□□□□ 0.9
USHBP1-202ENST00000324554 TERF2IPQ9NYB0 399 aa20.66■□□□□ 0.9
USHBP1-202ENST00000324554 MED14O60244 1454 aa20.66■□□□□ 0.9
USHBP1-202ENST00000324554 FYB1O15117 783 aa20.65■□□□□ 0.9
USHBP1-202ENST00000324554 ROBO2Q9HCK4 1378 aa20.65■□□□□ 0.9
USHBP1-202ENST00000324554 RLBP1P12271 317 aa20.64■□□□□ 0.89
USHBP1-202ENST00000324554 BCL2L13Q9BXK5 485 aa20.64■□□□□ 0.89
USHBP1-202ENST00000324554 NFKBIBQ15653 356 aa20.64■□□□□ 0.89
USHBP1-202ENST00000324554 PLEKHF1Q96S99 279 aa20.64■□□□□ 0.89
USHBP1-202ENST00000324554 PLEKHG1Q9ULL1 1385 aa20.63■□□□□ 0.89
USHBP1-202ENST00000324554 DAXXQ9UER7 740 aaPredicted RBP20.63■□□□□ 0.89
USHBP1-202ENST00000324554 TNNQ9UQP3 1299 aa20.63■□□□□ 0.89
USHBP1-202ENST00000324554 VIRMAQ69YN4 1812 aaKnown RBP20.63■□□□□ 0.89
USHBP1-202ENST00000324554 WASLO00401 505 aaPredicted RBP20.62■□□□□ 0.89
USHBP1-202ENST00000324554 AAMPQ13685 434 aa20.62■□□□□ 0.89
USHBP1-202ENST00000324554 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.62■□□□□ 0.89
USHBP1-202ENST00000324554 U2SURPO15042 1029 aaKnown RBP20.62■□□□□ 0.89
USHBP1-202ENST00000324554 DLC1Q96QB1 1528 aa20.61■□□□□ 0.89
USHBP1-202ENST00000324554 AMOTL2Q9Y2J4 779 aa20.61■□□□□ 0.89
USHBP1-202ENST00000324554 MAPK8IP3Q9UPT6 1336 aa20.6■□□□□ 0.89
USHBP1-202ENST00000324554 USP19O94966 1318 aa20.59■□□□□ 0.89
USHBP1-202ENST00000324554 PTPRUQ92729 1446 aa20.59■□□□□ 0.89
USHBP1-202ENST00000324554 TMPOP42166 694 aaKnown RBP20.59■□□□□ 0.89
USHBP1-202ENST00000324554 HDGFL2Q7Z4V5 671 aaPredicted RBP20.58■□□□□ 0.89
USHBP1-202ENST00000324554 PMFBP1Q8TBY8 1022 aa20.58■□□□□ 0.89
USHBP1-202ENST00000324554 PCDHB15Q9Y5E8 787 aa20.58■□□□□ 0.89
USHBP1-202ENST00000324554 FBLN1P23142 703 aa20.58■□□□□ 0.88
USHBP1-202ENST00000324554 TRIM35Q9UPQ4 493 aa20.58■□□□□ 0.88
USHBP1-202ENST00000324554 TSR2Q969E8 191 aaKnown RBP20.57■□□□□ 0.88
USHBP1-202ENST00000324554 NUDT16Q96DE0 195 aaKnown RBP20.57■□□□□ 0.88
USHBP1-202ENST00000324554 PNPLA6Q8IY17 1366 aa20.57■□□□□ 0.88
USHBP1-202ENST00000324554 SEC24BO95487 1268 aa20.57■□□□□ 0.88
USHBP1-202ENST00000324554 CT47B1P0C2W7 299 aaPredicted RBP20.57■□□□□ 0.88
USHBP1-202ENST00000324554 ARHGAP23Q9P227 1491 aa20.57■□□□□ 0.88
USHBP1-202ENST00000324554 SLIT1O75093 1534 aa20.56■□□□□ 0.88
USHBP1-202ENST00000324554 KIF20BQ96Q89 1820 aa20.56■□□□□ 0.88
USHBP1-202ENST00000324554 IL27Q8NEV9 243 aa20.55■□□□□ 0.88
USHBP1-202ENST00000324554 RBM33Q96EV2 1170 aaKnown RBP20.55■□□□□ 0.88
USHBP1-202ENST00000324554 DIAPH1O60610 1272 aaKnown RBP20.54■□□□□ 0.88
USHBP1-202ENST00000324554 ZKSCAN2Q63HK3 967 aa20.54■□□□□ 0.88
USHBP1-202ENST00000324554 CEP170BQ9Y4F5 1589 aaPredicted RBP20.54■□□□□ 0.88
USHBP1-202ENST00000324554 PRR36Q9H6K5 1346 aa20.54■□□□□ 0.88
USHBP1-202ENST00000324554 TECPR2O15040 1411 aa20.53■□□□□ 0.88
USHBP1-202ENST00000324554 FAM135BQ49AJ0 1406 aa20.53■□□□□ 0.88
USHBP1-202ENST00000324554 PPIP5K1Q6PFW1 1433 aa20.53■□□□□ 0.88
USHBP1-202ENST00000324554 EXOSC9Q06265 439 aaKnown RBP20.53■□□□□ 0.88
USHBP1-202ENST00000324554 MVPQ14764 893 aaKnown RBP20.53■□□□□ 0.88
USHBP1-202ENST00000324554 TBX22Q9Y458 520 aa20.53■□□□□ 0.88
USHBP1-202ENST00000324554 GSE1Q14687 1217 aa20.52■□□□□ 0.88
USHBP1-202ENST00000324554 ZRANB1Q9UGI0 708 aa20.52■□□□□ 0.88
USHBP1-202ENST00000324554 IL16Q14005 1332 aa20.52■□□□□ 0.88
USHBP1-202ENST00000324554 SIRT1Q96EB6 747 aa20.52■□□□□ 0.87
USHBP1-202ENST00000324554 ADAMTSL3P82987 1691 aa20.51■□□□□ 0.87
USHBP1-202ENST00000324554 CPS1P31327 1500 aa20.51■□□□□ 0.87
USHBP1-202ENST00000324554 ATP7BP35670 1465 aa20.51■□□□□ 0.87
USHBP1-202ENST00000324554 DZIP1LQ8IYY4 767 aaKnown RBP20.51■□□□□ 0.87
USHBP1-202ENST00000324554 SMC4Q9NTJ3 1288 aa20.51■□□□□ 0.87
USHBP1-202ENST00000324554 CCDC61Q9Y6R9 512 aa20.51■□□□□ 0.87
USHBP1-202ENST00000324554 CDC42BPGQ6DT37 1551 aa20.5■□□□□ 0.87
USHBP1-202ENST00000324554 KCNA6P17658 529 aa20.5■□□□□ 0.87
USHBP1-202ENST00000324554 RIPK4P57078 832 aa20.5■□□□□ 0.87
USHBP1-202ENST00000324554 FTSJ3Q8IY81 847 aaKnown RBP20.5■□□□□ 0.87
USHBP1-202ENST00000324554 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.5■□□□□ 0.87
USHBP1-202ENST00000324554 FRAT2O75474 233 aaPredicted RBP20.49■□□□□ 0.87
USHBP1-202ENST00000324554 KNDC1Q76NI1 1749 aa20.49■□□□□ 0.87
USHBP1-202ENST00000324554 ANKLE2Q86XL3 938 aa20.49■□□□□ 0.87
USHBP1-202ENST00000324554 RWDD1Q9H446 243 aaPredicted RBP20.49■□□□□ 0.87
USHBP1-202ENST00000324554 NME9Q86XW9 330 aa20.48■□□□□ 0.87
USHBP1-202ENST00000324554 SSH1Q8WYL5 1049 aa20.48■□□□□ 0.87
USHBP1-202ENST00000324554 PNNQ9H307 717 aaKnown RBP20.48■□□□□ 0.87
USHBP1-202ENST00000324554 PDZRN3Q9UPQ7 1066 aa20.48■□□□□ 0.87
USHBP1-202ENST00000324554 LRRC7Q96NW7 1537 aa20.48■□□□□ 0.87
USHBP1-202ENST00000324554 TRIM27P14373 513 aa20.47■□□□□ 0.87
USHBP1-202ENST00000324554 FCHSD2O94868 740 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms