RNA–Protein interactions for RNA: ENST00000316097.12

SCAMP4-201, Transcript of secretory carrier membrane protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCAMP4, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-201ENST00000316097 INSRP06213 1382 aa22.23■■□□□ 1.15
SCAMP4-201ENST00000316097 HDGFL2Q7Z4V5 671 aaPredicted RBP22.23■■□□□ 1.15
SCAMP4-201ENST00000316097 FAM161AQ3B820 660 aa22.22■■□□□ 1.15
SCAMP4-201ENST00000316097 NUDT16Q96DE0 195 aaKnown RBP22.22■■□□□ 1.15
SCAMP4-201ENST00000316097 C8orf34Q49A92 452 aa22.21■■□□□ 1.15
SCAMP4-201ENST00000316097 ARHGAP23Q9P227 1491 aa22.2■■□□□ 1.14
SCAMP4-201ENST00000316097 SLIT1O75093 1534 aa22.19■■□□□ 1.14
SCAMP4-201ENST00000316097 PRR36Q9H6K5 1346 aa22.18■■□□□ 1.14
SCAMP4-201ENST00000316097 NINLQ9Y2I6 1382 aa22.18■■□□□ 1.14
SCAMP4-201ENST00000316097 TECPR2O15040 1411 aa22.18■■□□□ 1.14
SCAMP4-201ENST00000316097 RBM33Q96EV2 1170 aaKnown RBP22.18■■□□□ 1.14
SCAMP4-201ENST00000316097 TBX22Q9Y458 520 aa22.18■■□□□ 1.14
SCAMP4-201ENST00000316097 FAM135BQ49AJ0 1406 aa22.18■■□□□ 1.14
SCAMP4-201ENST00000316097 SIRT1Q96EB6 747 aa22.17■■□□□ 1.14
SCAMP4-201ENST00000316097 MED14O60244 1454 aa22.17■■□□□ 1.14
SCAMP4-201ENST00000316097 APAF1O14727 1248 aa22.17■■□□□ 1.14
SCAMP4-201ENST00000316097 ZRANB1Q9UGI0 708 aa22.17■■□□□ 1.14
SCAMP4-201ENST00000316097 PPIP5K1Q6PFW1 1433 aa22.17■■□□□ 1.14
SCAMP4-201ENST00000316097 RGS3P49796 1198 aa22.16■■□□□ 1.14
SCAMP4-201ENST00000316097 FRAT2O75474 233 aaPredicted RBP22.15■■□□□ 1.14
SCAMP4-201ENST00000316097 DUSP27Q5VZP5 1158 aa22.15■■□□□ 1.14
SCAMP4-201ENST00000316097 CCDC61Q9Y6R9 512 aa22.15■■□□□ 1.14
SCAMP4-201ENST00000316097 CEP170BQ9Y4F5 1589 aaPredicted RBP22.14■■□□□ 1.13
SCAMP4-201ENST00000316097 KCNA6P17658 529 aa22.14■■□□□ 1.13
SCAMP4-201ENST00000316097 POLR3AO14802 1390 aaPredicted RBP22.13■■□□□ 1.13
SCAMP4-201ENST00000316097 CPS1P31327 1500 aa22.13■■□□□ 1.13
SCAMP4-201ENST00000316097 NME9Q86XW9 330 aa22.13■■□□□ 1.13
SCAMP4-201ENST00000316097 ANKLE2Q86XL3 938 aa22.12■■□□□ 1.13
SCAMP4-201ENST00000316097 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.11■■□□□ 1.13
SCAMP4-201ENST00000316097 ADAMTSL3P82987 1691 aa22.11■■□□□ 1.13
SCAMP4-201ENST00000316097 NEUROD2Q15784 382 aa22.11■■□□□ 1.13
SCAMP4-201ENST00000316097 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.11■■□□□ 1.13
SCAMP4-201ENST00000316097 USP32Q8NFA0 1604 aa22.11■■□□□ 1.13
SCAMP4-201ENST00000316097 NSD2O96028 1365 aa22.1■■□□□ 1.13
SCAMP4-201ENST00000316097 RRP7AQ9Y3A4 280 aaKnown RBP22.1■■□□□ 1.13
SCAMP4-201ENST00000316097 KNDC1Q76NI1 1749 aa22.09■■□□□ 1.13
SCAMP4-201ENST00000316097 GOLGA2Q08379 1002 aa22.08■■□□□ 1.13
SCAMP4-201ENST00000316097 PMFBP1Q8TBY8 1022 aa22.08■■□□□ 1.13
SCAMP4-201ENST00000316097 CFAP53Q96M91 514 aa22.08■■□□□ 1.12
SCAMP4-201ENST00000316097 EIF5BO60841 1220 aaKnown RBP22.07■■□□□ 1.12
SCAMP4-201ENST00000316097 CPSF1Q10570 1443 aaKnown RBP22.07■■□□□ 1.12
SCAMP4-201ENST00000316097 U2AF1L5P0DN76 240 aaPredicted RBP22.06■■□□□ 1.12
SCAMP4-201ENST00000316097 U2AF1Q01081 240 aaKnown RBP eCLIP22.06■■□□□ 1.12
SCAMP4-201ENST00000316097 SPINK5Q9NQ38 1064 aaPredicted RBP22.06■■□□□ 1.12
SCAMP4-201ENST00000316097 DMRT2Q9Y5R5 561 aa22.06■■□□□ 1.12
SCAMP4-201ENST00000316097 ATP7BP35670 1465 aa22.05■■□□□ 1.12
SCAMP4-201ENST00000316097 U2SURPO15042 1029 aaKnown RBP22.05■■□□□ 1.12
SCAMP4-201ENST00000316097 ACEP12821 1306 aa22.05■■□□□ 1.12
SCAMP4-201ENST00000316097 ZNF521Q96K83 1311 aa22.05■■□□□ 1.12
SCAMP4-201ENST00000316097 EMILIN1Q9Y6C2 1016 aa22.02■■□□□ 1.11
SCAMP4-201ENST00000316097 SHPRHQ149N8 1683 aa22.01■■□□□ 1.11
SCAMP4-201ENST00000316097 POLKQ9UBT6 870 aa22.01■■□□□ 1.11
SCAMP4-201ENST00000316097 SLFN5Q08AF3 891 aa22.01■■□□□ 1.11
SCAMP4-201ENST00000316097 TCP11L2Q8N4U5 519 aa22.01■■□□□ 1.11
SCAMP4-201ENST00000316097 RRS1Q15050 365 aaKnown RBP22■■□□□ 1.11
SCAMP4-201ENST00000316097 EDC4Q6P2E9 1401 aaKnown RBP21.99■■□□□ 1.11
SCAMP4-201ENST00000316097 SOX12O15370 315 aa21.99■■□□□ 1.11
SCAMP4-201ENST00000316097 RUNDC1Q96C34 613 aa21.98■■□□□ 1.11
SCAMP4-201ENST00000316097 ZNF692Q9BU19 519 aaPredicted RBP21.98■■□□□ 1.11
SCAMP4-201ENST00000316097 NKTRP30414 1462 aaKnown RBP21.97■■□□□ 1.11
SCAMP4-201ENST00000316097 BCAR3O75815 825 aa21.97■■□□□ 1.11
SCAMP4-201ENST00000316097 FAM43AQ8N2R8 423 aa21.97■■□□□ 1.11
SCAMP4-201ENST00000316097 COG3Q96JB2 828 aa21.97■■□□□ 1.11
SCAMP4-201ENST00000316097 PTCH1Q13635 1447 aa21.97■■□□□ 1.11
SCAMP4-201ENST00000316097 CDC42BPGQ6DT37 1551 aa21.97■■□□□ 1.11
SCAMP4-201ENST00000316097 PLEKHG3A1L390 1219 aa21.96■■□□□ 1.11
SCAMP4-201ENST00000316097 WWC1Q8IX03 1113 aa21.95■■□□□ 1.1
SCAMP4-201ENST00000316097 TTC21BQ7Z4L5 1316 aa21.95■■□□□ 1.1
SCAMP4-201ENST00000316097 DIAPH1O60610 1272 aaKnown RBP21.95■■□□□ 1.1
SCAMP4-201ENST00000316097 NGDNQ8NEJ9 315 aaKnown RBP21.95■■□□□ 1.1
SCAMP4-201ENST00000316097 USP19O94966 1318 aa21.95■■□□□ 1.1
SCAMP4-201ENST00000316097 SETD1BQ9UPS6 1966 aaKnown RBP21.95■■□□□ 1.1
SCAMP4-201ENST00000316097 IGHDP01880 384 aa21.94■■□□□ 1.1
SCAMP4-201ENST00000316097 UBE2Q2Q8WVN8 375 aa21.94■■□□□ 1.1
SCAMP4-201ENST00000316097 KIF20BQ96Q89 1820 aa21.93■■□□□ 1.1
SCAMP4-201ENST00000316097 ADGRB2O60241 1585 aa21.93■■□□□ 1.1
SCAMP4-201ENST00000316097 TRMT2AQ8IZ69 625 aaKnown RBP21.93■■□□□ 1.1
SCAMP4-201ENST00000316097 DIP2AQ14689 1571 aa21.92■■□□□ 1.1
SCAMP4-201ENST00000316097 COL3A1P02461 1466 aaPredicted RBP21.91■■□□□ 1.1
SCAMP4-201ENST00000316097 XRN1Q8IZH2 1706 aaKnown RBP21.91■■□□□ 1.1
SCAMP4-201ENST00000316097 SEC24BO95487 1268 aa21.91■■□□□ 1.1
SCAMP4-201ENST00000316097 HSPA2P54652 639 aa21.91■■□□□ 1.1
SCAMP4-201ENST00000316097 NUTM2GQ5VZR2 741 aa21.91■■□□□ 1.1
SCAMP4-201ENST00000316097 ZNF142P52746 1687 aaPredicted RBP21.9■■□□□ 1.1
SCAMP4-201ENST00000316097 ANKRD26Q9UPS8 1709 aa21.9■■□□□ 1.1
SCAMP4-201ENST00000316097 HMOX1P09601 288 aa21.9■■□□□ 1.1
SCAMP4-201ENST00000316097 SLKQ9H2G2 1235 aaPredicted RBP21.9■■□□□ 1.1
SCAMP4-201ENST00000316097 NPHP4O75161 1426 aaPredicted RBP21.9■■□□□ 1.1
SCAMP4-201ENST00000316097 C14orf37Q86TY3 774 aa21.9■■□□□ 1.1
SCAMP4-201ENST00000316097 RSPH6AQ9H0K4 717 aa21.9■■□□□ 1.1
SCAMP4-201ENST00000316097 PLEKHF1Q96S99 279 aa21.89■■□□□ 1.1
SCAMP4-201ENST00000316097 PNPLA6Q8IY17 1366 aa21.89■■□□□ 1.09
SCAMP4-201ENST00000316097 PIK3R4Q99570 1358 aa21.89■■□□□ 1.09
SCAMP4-201ENST00000316097 RGPD8O14715 1765 aaPredicted RBP21.89■■□□□ 1.09
SCAMP4-201ENST00000316097 USP6P35125 1406 aa21.89■■□□□ 1.09
SCAMP4-201ENST00000316097 BECN1Q14457 450 aa21.88■■□□□ 1.09
SCAMP4-201ENST00000316097 MON2Q7Z3U7 1717 aa21.86■■□□□ 1.09
SCAMP4-201ENST00000316097 E9PSI1 815 aa21.86■■□□□ 1.09
SCAMP4-201ENST00000316097 ITSN1Q15811 1721 aa21.86■■□□□ 1.09
SCAMP4-201ENST00000316097 AKAP12Q02952 1782 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms