RNA–Protein interactions for RNA: ENST00000315286.12

CCDC43-201, Transcript of coiled-coil domain containing 43, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC43, Length 2,082 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-201ENST00000315286 RRP7AQ9Y3A4 280 aaKnown RBP24.11■■□□□ 1.45
CCDC43-201ENST00000315286 E9PSI1 815 aa24.11■■□□□ 1.45
CCDC43-201ENST00000315286 EXOC6Q8TAG9 804 aa24.11■■□□□ 1.45
CCDC43-201ENST00000315286 CCDC136Q96JN2 1154 aa24.11■■□□□ 1.45
CCDC43-201ENST00000315286 CEP170BQ9Y4F5 1589 aaPredicted RBP24.09■■□□□ 1.45
CCDC43-201ENST00000315286 MON2Q7Z3U7 1717 aa24.09■■□□□ 1.45
CCDC43-201ENST00000315286 FBLN1P23142 703 aa24.09■■□□□ 1.45
CCDC43-201ENST00000315286 NME9Q86XW9 330 aa24.09■■□□□ 1.45
CCDC43-201ENST00000315286 AKAP12Q02952 1782 aa24.08■■□□□ 1.45
CCDC43-201ENST00000315286 DNAJC5Q9H3Z4 198 aa24.08■■□□□ 1.45
CCDC43-201ENST00000315286 PNPLA6Q8IY17 1366 aa24.08■■□□□ 1.45
CCDC43-201ENST00000315286 U2SURPO15042 1029 aaKnown RBP24.07■■□□□ 1.44
CCDC43-201ENST00000315286 PHF23Q9BUL5 403 aaPredicted RBP24.07■■□□□ 1.44
CCDC43-201ENST00000315286 ITSN1Q15811 1721 aa24.07■■□□□ 1.44
CCDC43-201ENST00000315286 POLKQ9UBT6 870 aa24.06■■□□□ 1.44
CCDC43-201ENST00000315286 ZRANB1Q9UGI0 708 aa24.06■■□□□ 1.44
CCDC43-201ENST00000315286 NKTRP30414 1462 aaKnown RBP24.06■■□□□ 1.44
CCDC43-201ENST00000315286 DIP2AQ14689 1571 aa24.06■■□□□ 1.44
CCDC43-201ENST00000315286 MAP2P11137 1827 aaKnown RBP24.06■■□□□ 1.44
CCDC43-201ENST00000315286 NUTM2FA1L443 756 aa24.06■■□□□ 1.44
CCDC43-201ENST00000315286 ZNF692Q9BU19 519 aaPredicted RBP24.06■■□□□ 1.44
CCDC43-201ENST00000315286 DIAPH1O60610 1272 aaKnown RBP24.04■■□□□ 1.44
CCDC43-201ENST00000315286 PTCH1Q13635 1447 aa24.04■■□□□ 1.44
CCDC43-201ENST00000315286 ADAMTSL3P82987 1691 aa24.04■■□□□ 1.44
CCDC43-201ENST00000315286 PLEKHF1Q96S99 279 aa24.03■■□□□ 1.44
CCDC43-201ENST00000315286 CCDC27Q2M243 656 aa24.03■■□□□ 1.44
CCDC43-201ENST00000315286 TOPAZ1Q8N9V7 1692 aa24.02■■□□□ 1.44
CCDC43-201ENST00000315286 PPM1GO15355 546 aaPredicted RBP24.02■■□□□ 1.44
CCDC43-201ENST00000315286 PLEKHG3A1L390 1219 aa24.01■■□□□ 1.43
CCDC43-201ENST00000315286 NCBP3Q53F19 620 aaKnown RBP24.01■■□□□ 1.43
CCDC43-201ENST00000315286 WDR63Q8IWG1 891 aa24.01■■□□□ 1.43
CCDC43-201ENST00000315286 ACEP12821 1306 aa24.01■■□□□ 1.43
CCDC43-201ENST00000315286 COG3Q96JB2 828 aa24■■□□□ 1.43
CCDC43-201ENST00000315286 C20orf194Q5TEA3 1177 aa23.99■■□□□ 1.43
CCDC43-201ENST00000315286 CRBNQ96SW2 442 aa23.99■■□□□ 1.43
CCDC43-201ENST00000315286 XRN1Q8IZH2 1706 aaKnown RBP23.99■■□□□ 1.43
CCDC43-201ENST00000315286 EMILIN1Q9Y6C2 1016 aa23.98■■□□□ 1.43
CCDC43-201ENST00000315286 SETD1BQ9UPS6 1966 aaKnown RBP23.97■■□□□ 1.43
CCDC43-201ENST00000315286 AATKQ6ZMQ8 1374 aa23.97■■□□□ 1.43
CCDC43-201ENST00000315286 KCNA6P17658 529 aa23.96■■□□□ 1.43
CCDC43-201ENST00000315286 TTC21BQ7Z4L5 1316 aa23.96■■□□□ 1.43
CCDC43-201ENST00000315286 ANKLE2Q86XL3 938 aa23.96■■□□□ 1.43
CCDC43-201ENST00000315286 ZNF142P52746 1687 aaPredicted RBP23.95■■□□□ 1.42
CCDC43-201ENST00000315286 TMPOP42166 694 aaKnown RBP23.95■■□□□ 1.42
CCDC43-201ENST00000315286 PIK3R4Q99570 1358 aa23.95■■□□□ 1.42
CCDC43-201ENST00000315286 MAPK8IP3Q9UPT6 1336 aa23.95■■□□□ 1.42
CCDC43-201ENST00000315286 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.95■■□□□ 1.42
CCDC43-201ENST00000315286 NRKQ7Z2Y5 1582 aa23.94■■□□□ 1.42
CCDC43-201ENST00000315286 BCAR3O75815 825 aa23.94■■□□□ 1.42
CCDC43-201ENST00000315286 RBM19Q9Y4C8 960 aaKnown RBP23.94■■□□□ 1.42
CCDC43-201ENST00000315286 USP6P35125 1406 aa23.93■■□□□ 1.42
CCDC43-201ENST00000315286 RGPD8O14715 1765 aaPredicted RBP23.93■■□□□ 1.42
CCDC43-201ENST00000315286 FCHSD2O94868 740 aa23.92■■□□□ 1.42
CCDC43-201ENST00000315286 RRS1Q15050 365 aaKnown RBP23.92■■□□□ 1.42
CCDC43-201ENST00000315286 PNNQ9H307 717 aaKnown RBP23.92■■□□□ 1.42
CCDC43-201ENST00000315286 PMFBP1Q8TBY8 1022 aa23.91■■□□□ 1.42
CCDC43-201ENST00000315286 CDK12Q9NYV4 1490 aaPredicted RBP23.91■■□□□ 1.42
CCDC43-201ENST00000315286 TRIM35Q9UPQ4 493 aa23.91■■□□□ 1.42
CCDC43-201ENST00000315286 IL13P35225 146 aa23.9■■□□□ 1.42
CCDC43-201ENST00000315286 RSPH6AQ9H0K4 717 aa23.9■■□□□ 1.42
CCDC43-201ENST00000315286 LRRC7Q96NW7 1537 aa23.88■■□□□ 1.41
CCDC43-201ENST00000315286 SSH2Q76I76 1423 aa23.88■■□□□ 1.41
CCDC43-201ENST00000315286 MYH16Q9H6N6 1097 aa23.88■■□□□ 1.41
CCDC43-201ENST00000315286 CHD2O14647 1828 aaKnown RBP23.87■■□□□ 1.41
CCDC43-201ENST00000315286 PRKAR2BP31323 418 aa23.87■■□□□ 1.41
CCDC43-201ENST00000315286 RIPK4P57078 832 aa23.87■■□□□ 1.41
CCDC43-201ENST00000315286 OVOS2A0A0J9YW53 1432 aa23.87■■□□□ 1.41
CCDC43-201ENST00000315286 OVOS2Q6IE36 1432 aa23.87■■□□□ 1.41
CCDC43-201ENST00000315286 HMOX1P09601 288 aa23.86■■□□□ 1.41
CCDC43-201ENST00000315286 NGDNQ8NEJ9 315 aaKnown RBP23.85■■□□□ 1.41
CCDC43-201ENST00000315286 RARSP54136 660 aaKnown RBP23.83■■□□□ 1.41
CCDC43-201ENST00000315286 PHACTR3Q96KR7 559 aa23.82■■□□□ 1.4
CCDC43-201ENST00000315286 ANKARQ7Z5J8 1434 aa23.82■■□□□ 1.4
CCDC43-201ENST00000315286 TTC21AQ8NDW8 1320 aa23.82■■□□□ 1.4
CCDC43-201ENST00000315286 NALCNQ8IZF0 1738 aa23.81■■□□□ 1.4
CCDC43-201ENST00000315286 FMN2Q9NZ56 1722 aa23.81■■□□□ 1.4
CCDC43-201ENST00000315286 NEFMP07197 916 aa23.81■■□□□ 1.4
CCDC43-201ENST00000315286 TSR2Q969E8 191 aaKnown RBP23.81■■□□□ 1.4
CCDC43-201ENST00000315286 USP31Q70CQ4 1352 aa23.81■■□□□ 1.4
CCDC43-201ENST00000315286 FANCIQ9NVI1 1328 aa23.8■■□□□ 1.4
CCDC43-201ENST00000315286 IL16Q14005 1332 aa23.8■■□□□ 1.4
CCDC43-201ENST00000315286 RBM33Q96EV2 1170 aaKnown RBP23.79■■□□□ 1.4
CCDC43-201ENST00000315286 PDE3AQ14432 1141 aa23.77■■□□□ 1.4
CCDC43-201ENST00000315286 NFE2L2Q16236 605 aa23.77■■□□□ 1.4
CCDC43-201ENST00000315286 NPHP4O75161 1426 aaPredicted RBP23.77■■□□□ 1.4
CCDC43-201ENST00000315286 SOX12O15370 315 aa23.76■■□□□ 1.39
CCDC43-201ENST00000315286 EIF4A2Q14240 407 aaKnown RBP23.76■■□□□ 1.39
CCDC43-201ENST00000315286 CANXP27824 592 aaKnown RBP23.75■■□□□ 1.39
CCDC43-201ENST00000315286 EXOSC9Q06265 439 aaKnown RBP23.75■■□□□ 1.39
CCDC43-201ENST00000315286 FRAT1Q92837 279 aaPredicted RBP23.75■■□□□ 1.39
CCDC43-201ENST00000315286 PEAK1Q9H792 1746 aa23.75■■□□□ 1.39
CCDC43-201ENST00000315286 BCL2L13Q9BXK5 485 aa23.75■■□□□ 1.39
CCDC43-201ENST00000315286 HSP90AB2PQ58FF8 381 aa23.74■■□□□ 1.39
CCDC43-201ENST00000315286 PIK3C2AO00443 1686 aa23.73■■□□□ 1.39
CCDC43-201ENST00000315286 CT47B1P0C2W7 299 aaPredicted RBP23.73■■□□□ 1.39
CCDC43-201ENST00000315286 PANK1Q8TE04 598 aa23.73■■□□□ 1.39
CCDC43-201ENST00000315286 MAP3K19Q56UN5 1328 aa23.71■■□□□ 1.39
CCDC43-201ENST00000315286 KDM2BQ8NHM5 1336 aa23.71■■□□□ 1.39
CCDC43-201ENST00000315286 AEBP1Q8IUX7 1158 aa23.7■■□□□ 1.38
CCDC43-201ENST00000315286 DLG5Q8TDM6 1919 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms