RNA–Protein interactions for RNA: ENST00000314289.12

RNF4-201, Transcript of ring finger protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF4, Length 3,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-201ENST00000314289 DIAPH1O60610 1272 aaKnown RBP16.16■□□□□ 0.18
RNF4-201ENST00000314289 RRS1Q15050 365 aaKnown RBP16.16■□□□□ 0.18
RNF4-201ENST00000314289 TSR2Q969E8 191 aaKnown RBP16.16■□□□□ 0.18
RNF4-201ENST00000314289 POLKQ9UBT6 870 aa16.16■□□□□ 0.18
RNF4-201ENST00000314289 EID1Q9Y6B2 187 aa16.16■□□□□ 0.18
RNF4-201ENST00000314289 CCDC61Q9Y6R9 512 aa16.16■□□□□ 0.18
RNF4-201ENST00000314289 DLC1Q96QB1 1528 aa16.16■□□□□ 0.18
RNF4-201ENST00000314289 HMOX1P09601 288 aa16.16■□□□□ 0.18
RNF4-201ENST00000314289 CANXP27824 592 aaKnown RBP16.15■□□□□ 0.18
RNF4-201ENST00000314289 AMOTL2Q9Y2J4 779 aa16.14■□□□□ 0.17
RNF4-201ENST00000314289 MAPK8IP3Q9UPT6 1336 aa16.14■□□□□ 0.17
RNF4-201ENST00000314289 TNNQ9UQP3 1299 aa16.13■□□□□ 0.17
RNF4-201ENST00000314289 IQSEC2Q5JU85 1478 aa16.13■□□□□ 0.17
RNF4-201ENST00000314289 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.13■□□□□ 0.17
RNF4-201ENST00000314289 PANK1Q8TE04 598 aa16.13■□□□□ 0.17
RNF4-201ENST00000314289 RBM33Q96EV2 1170 aaKnown RBP16.13■□□□□ 0.17
RNF4-201ENST00000314289 PLEKHF1Q96S99 279 aa16.13■□□□□ 0.17
RNF4-201ENST00000314289 PMFBP1Q8TBY8 1022 aa16.13■□□□□ 0.17
RNF4-201ENST00000314289 TMPOP42166 694 aaKnown RBP16.12■□□□□ 0.17
RNF4-201ENST00000314289 PHF23Q9BUL5 403 aaPredicted RBP16.11■□□□□ 0.17
RNF4-201ENST00000314289 C3P01024 1663 aa16.11■□□□□ 0.17
RNF4-201ENST00000314289 PTPRUQ92729 1446 aa16.11■□□□□ 0.17
RNF4-201ENST00000314289 RIPK4P57078 832 aa16.11■□□□□ 0.17
RNF4-201ENST00000314289 CLUAP1Q96AJ1 413 aa16.11■□□□□ 0.17
RNF4-201ENST00000314289 COL3A1P02461 1466 aaPredicted RBP16.11■□□□□ 0.17
RNF4-201ENST00000314289 PRKAR2BP31323 418 aa16.1■□□□□ 0.17
RNF4-201ENST00000314289 COG6Q9Y2V7 657 aa16.1■□□□□ 0.17
RNF4-201ENST00000314289 NGEFQ8N5V2 710 aa16.1■□□□□ 0.17
RNF4-201ENST00000314289 ATP7BP35670 1465 aa16.1■□□□□ 0.17
RNF4-201ENST00000314289 CPS1P31327 1500 aa16.1■□□□□ 0.17
RNF4-201ENST00000314289 PLEKHG1Q9ULL1 1385 aa16.1■□□□□ 0.17
RNF4-201ENST00000314289 CPSF1Q10570 1443 aaKnown RBP16.1■□□□□ 0.17
RNF4-201ENST00000314289 COG3Q96JB2 828 aa16.1■□□□□ 0.17
RNF4-201ENST00000314289 TRIM35Q9UPQ4 493 aa16.1■□□□□ 0.17
RNF4-201ENST00000314289 WDR63Q8IWG1 891 aa16.09■□□□□ 0.17
RNF4-201ENST00000314289 KIF20BQ96Q89 1820 aa16.09■□□□□ 0.17
RNF4-201ENST00000314289 FAM135BQ49AJ0 1406 aa16.09■□□□□ 0.17
RNF4-201ENST00000314289 PHACTR3Q96KR7 559 aa16.09■□□□□ 0.17
RNF4-201ENST00000314289 ACEP12821 1306 aa16.09■□□□□ 0.17
RNF4-201ENST00000314289 ANP32AP39687 249 aaKnown RBP16.08■□□□□ 0.17
RNF4-201ENST00000314289 RARSP54136 660 aaKnown RBP16.08■□□□□ 0.17
RNF4-201ENST00000314289 THUMPD2Q9BTF0 503 aaKnown RBP16.08■□□□□ 0.17
RNF4-201ENST00000314289 LAS1LQ9Y4W2 734 aaKnown RBP16.08■□□□□ 0.17
RNF4-201ENST00000314289 FER1L4A9Z1Z3 1794 aa16.08■□□□□ 0.16
RNF4-201ENST00000314289 MAP2P11137 1827 aaKnown RBP16.08■□□□□ 0.16
RNF4-201ENST00000314289 THEMISQ8N1K5 641 aaPredicted RBP16.08■□□□□ 0.16
RNF4-201ENST00000314289 TECPR2O15040 1411 aa16.08■□□□□ 0.16
RNF4-201ENST00000314289 EDC4Q6P2E9 1401 aaKnown RBP16.07■□□□□ 0.16
RNF4-201ENST00000314289 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.07■□□□□ 0.16
RNF4-201ENST00000314289 ANKRD26Q9UPS8 1709 aa16.07■□□□□ 0.16
RNF4-201ENST00000314289 MED14O60244 1454 aa16.07■□□□□ 0.16
RNF4-201ENST00000314289 EXOSC9Q06265 439 aaKnown RBP16.06■□□□□ 0.16
RNF4-201ENST00000314289 CCDC27Q2M243 656 aa16.06■□□□□ 0.16
RNF4-201ENST00000314289 PNPLA6Q8IY17 1366 aa16.06■□□□□ 0.16
RNF4-201ENST00000314289 SIRT1Q96EB6 747 aa16.05■□□□□ 0.16
RNF4-201ENST00000314289 MYH16Q9H6N6 1097 aa16.05■□□□□ 0.16
RNF4-201ENST00000314289 RLBP1P12271 317 aa16.05■□□□□ 0.16
RNF4-201ENST00000314289 NPM2Q86SE8 214 aaKnown RBP16.05■□□□□ 0.16
RNF4-201ENST00000314289 KCNA6P17658 529 aa16.05■□□□□ 0.16
RNF4-201ENST00000314289 RSPH6AQ9H0K4 717 aa16.04■□□□□ 0.16
RNF4-201ENST00000314289 RTL5Q5HYW3 569 aaPredicted RBP16.03■□□□□ 0.16
RNF4-201ENST00000314289 NUTM2GQ5VZR2 741 aa16.03■□□□□ 0.16
RNF4-201ENST00000314289 CDC42BPGQ6DT37 1551 aa16.03■□□□□ 0.16
RNF4-201ENST00000314289 TTC21BQ7Z4L5 1316 aa16.03■□□□□ 0.16
RNF4-201ENST00000314289 IL13P35225 146 aa16.03■□□□□ 0.16
RNF4-201ENST00000314289 IPO9Q96P70 1041 aaKnown RBP16.03■□□□□ 0.16
RNF4-201ENST00000314289 ZBTB47Q9UFB7 747 aaPredicted RBP16.03■□□□□ 0.16
RNF4-201ENST00000314289 KNDC1Q76NI1 1749 aa16.02■□□□□ 0.16
RNF4-201ENST00000314289 FCHSD2O94868 740 aa16.02■□□□□ 0.16
RNF4-201ENST00000314289 RGS3P49796 1198 aa16.02■□□□□ 0.16
RNF4-201ENST00000314289 ZNF692Q9BU19 519 aaPredicted RBP16.02■□□□□ 0.16
RNF4-201ENST00000314289 TBX22Q9Y458 520 aa16.02■□□□□ 0.16
RNF4-201ENST00000314289 NGDNQ8NEJ9 315 aaKnown RBP16.02■□□□□ 0.15
RNF4-201ENST00000314289 KDM2BQ8NHM5 1336 aa16.02■□□□□ 0.15
RNF4-201ENST00000314289 LRRC7Q96NW7 1537 aa16.01■□□□□ 0.15
RNF4-201ENST00000314289 IGHDP01880 384 aa16.01■□□□□ 0.15
RNF4-201ENST00000314289 NEFMP07197 916 aa16.01■□□□□ 0.15
RNF4-201ENST00000314289 AEBP1Q8IUX7 1158 aa16.01■□□□□ 0.15
RNF4-201ENST00000314289 ADGRB2O60241 1585 aa16.01■□□□□ 0.15
RNF4-201ENST00000314289 FAM83GA6ND36 823 aa16■□□□□ 0.15
RNF4-201ENST00000314289 ELL2O00472 640 aaPredicted RBP16■□□□□ 0.15
RNF4-201ENST00000314289 PLEKHG5O94827 1062 aa16■□□□□ 0.15
RNF4-201ENST00000314289 PDE4AP27815 886 aa16■□□□□ 0.15
RNF4-201ENST00000314289 TCERG1O14776 1098 aaKnown RBP16■□□□□ 0.15
RNF4-201ENST00000314289 DCTN1Q14203 1278 aa16■□□□□ 0.15
RNF4-201ENST00000314289 SMC4Q9NTJ3 1288 aa16■□□□□ 0.15
RNF4-201ENST00000314289 HSP90AB2PQ58FF8 381 aa15.99■□□□□ 0.15
RNF4-201ENST00000314289 PDE3AQ14432 1141 aa15.98■□□□□ 0.15
RNF4-201ENST00000314289 CENPQQ7L2Z9 268 aaPredicted RBP15.98■□□□□ 0.15
RNF4-201ENST00000314289 ARHGAP23Q9P227 1491 aa15.98■□□□□ 0.15
RNF4-201ENST00000314289 SSH1Q8WYL5 1049 aa15.98■□□□□ 0.15
RNF4-201ENST00000314289 SLIT1O75093 1534 aa15.98■□□□□ 0.15
RNF4-201ENST00000314289 ITSN1Q15811 1721 aa15.97■□□□□ 0.15
RNF4-201ENST00000314289 PLEKHG3A1L390 1219 aa15.97■□□□□ 0.15
RNF4-201ENST00000314289 SULT6B1Q6IMI4 303 aa15.97■□□□□ 0.15
RNF4-201ENST00000314289 PNNQ9H307 717 aaKnown RBP15.97■□□□□ 0.15
RNF4-201ENST00000314289 MON2Q7Z3U7 1717 aa15.97■□□□□ 0.15
RNF4-201ENST00000314289 RIMS1Q86UR5 1692 aaKnown RBP15.96■□□□□ 0.15
RNF4-201ENST00000314289 RGPD8O14715 1765 aaPredicted RBP15.96■□□□□ 0.15
RNF4-201ENST00000314289 USP6P35125 1406 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms