RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 SBNO2Q9Y2G9 1366 aa16.98■□□□□ 0.31
SCFD1-201ENST00000311943 CD163L1Q9NR16 1453 aa16.97■□□□□ 0.31
SCFD1-201ENST00000311943 NGLY1Q96IV0 654 aa16.97■□□□□ 0.31
SCFD1-201ENST00000311943 C11orf95C9JLR9 678 aaPredicted RBP16.96■□□□□ 0.31
SCFD1-201ENST00000311943 ABTB2Q8N961 1025 aa16.95■□□□□ 0.3
SCFD1-201ENST00000311943 USP6P35125 1406 aa16.95■□□□□ 0.3
SCFD1-201ENST00000311943 ABCA3Q99758 1704 aa16.94■□□□□ 0.3
SCFD1-201ENST00000311943 POLR3GLQ9BT43 218 aa16.94■□□□□ 0.3
SCFD1-201ENST00000311943 FAM83GA6ND36 823 aa16.94■□□□□ 0.3
SCFD1-201ENST00000311943 HAP1P54257 671 aaPredicted RBP16.94■□□□□ 0.3
SCFD1-201ENST00000311943 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.94■□□□□ 0.32e-7■■■■□ 19.6
SCFD1-201ENST00000311943 SOX12O15370 315 aa16.93■□□□□ 0.3
SCFD1-201ENST00000311943 ZC3H6P61129 1189 aaKnown RBP16.93■□□□□ 0.3
SCFD1-201ENST00000311943 CHRNA2Q15822 529 aa16.92■□□□□ 0.3
SCFD1-201ENST00000311943 CPSF1Q10570 1443 aaKnown RBP16.92■□□□□ 0.3
SCFD1-201ENST00000311943 SSH2Q76I76 1423 aa16.92■□□□□ 0.3
SCFD1-201ENST00000311943 ATAD2Q6PL18 1390 aa16.91■□□□□ 0.3
SCFD1-201ENST00000311943 CRYBG1Q9Y4K1 1723 aa16.91■□□□□ 0.3
SCFD1-201ENST00000311943 A0A1W2PP64 1363 aa16.91■□□□□ 0.3
SCFD1-201ENST00000311943 NME9Q86XW9 330 aa16.91■□□□□ 0.3
SCFD1-201ENST00000311943 ARHGEF10O15013 1369 aa16.9■□□□□ 0.3
SCFD1-201ENST00000311943 KTN1Q86UP2 1357 aaKnown RBP16.9■□□□□ 0.3
SCFD1-201ENST00000311943 TMF1P82094 1093 aa16.9■□□□□ 0.3
SCFD1-201ENST00000311943 USP21Q9UK80 565 aa16.9■□□□□ 0.3
SCFD1-201ENST00000311943 BCL9LQ86UU0 1499 aa16.9■□□□□ 0.3
SCFD1-201ENST00000311943 TTC21BQ7Z4L5 1316 aa16.9■□□□□ 0.3
SCFD1-201ENST00000311943 FBLN1P23142 703 aa16.89■□□□□ 0.29
SCFD1-201ENST00000311943 EIF4G2P78344 907 aaKnown RBP eCLIP16.89■□□□□ 0.29
SCFD1-201ENST00000311943 AKAP12Q02952 1782 aa16.89■□□□□ 0.29
SCFD1-201ENST00000311943 PIK3C2AO00443 1686 aa16.89■□□□□ 0.29
SCFD1-201ENST00000311943 NLRP6P59044 892 aa16.89■□□□□ 0.29
SCFD1-201ENST00000311943 QTRT2Q9H974 415 aaKnown RBP16.89■□□□□ 0.29
SCFD1-201ENST00000311943 MARF1Q9Y4F3 1742 aaKnown RBP16.88■□□□□ 0.29
SCFD1-201ENST00000311943 ZBTB7CA1YPR0 619 aa16.88■□□□□ 0.29
SCFD1-201ENST00000311943 FNBP4Q8N3X1 1017 aaPredicted RBP16.88■□□□□ 0.29
SCFD1-201ENST00000311943 KIAA0232Q92628 1395 aa16.87■□□□□ 0.29
SCFD1-201ENST00000311943 NRKQ7Z2Y5 1582 aa16.87■□□□□ 0.29
SCFD1-201ENST00000311943 PHRF1Q9P1Y6 1649 aaKnown RBP16.87■□□□□ 0.29
SCFD1-201ENST00000311943 MON2Q7Z3U7 1717 aa16.85■□□□□ 0.29
SCFD1-201ENST00000311943 GCP02774 474 aa16.85■□□□□ 0.29
SCFD1-201ENST00000311943 ZNF772Q68DY9 489 aaPredicted RBP16.85■□□□□ 0.29
SCFD1-201ENST00000311943 CARD14Q9BXL6 1004 aa16.85■□□□□ 0.29
SCFD1-201ENST00000311943 BTG4Q9NY30 223 aa16.85■□□□□ 0.29
SCFD1-201ENST00000311943 MYOM1P52179 1685 aa16.84■□□□□ 0.29
SCFD1-201ENST00000311943 SLIT2O94813 1529 aa16.84■□□□□ 0.29
SCFD1-201ENST00000311943 ZNF692Q9BU19 519 aaPredicted RBP16.84■□□□□ 0.29
SCFD1-201ENST00000311943 USP19O94966 1318 aa16.83■□□□□ 0.28
SCFD1-201ENST00000311943 PRDM11Q9NQV5 511 aa16.83■□□□□ 0.28
SCFD1-201ENST00000311943 PLCH1Q4KWH8 1693 aa16.83■□□□□ 0.28
SCFD1-201ENST00000311943 NLRP13Q86W25 1043 aa16.82■□□□□ 0.28
SCFD1-201ENST00000311943 RXRBP28702 533 aa16.82■□□□□ 0.28
SCFD1-201ENST00000311943 HDGFL2Q7Z4V5 671 aaPredicted RBP16.82■□□□□ 0.28
SCFD1-201ENST00000311943 UNC5CLQ8IV45 518 aa16.8■□□□□ 0.28
SCFD1-201ENST00000311943 STRN4Q9NRL3 753 aa16.8■□□□□ 0.28
SCFD1-201ENST00000311943 AXIN2Q9Y2T1 843 aa16.8■□□□□ 0.28
SCFD1-201ENST00000311943 EP400Q96L91 3159 aa16.8■□□□□ 0.28
SCFD1-201ENST00000311943 PUS7Q96PZ0 661 aaKnown RBP16.8■□□□□ 0.28
SCFD1-201ENST00000311943 GGNBP2Q9H3C7 697 aa16.8■□□□□ 0.28
SCFD1-201ENST00000311943 TERF2IPQ9NYB0 399 aa16.8■□□□□ 0.28
SCFD1-201ENST00000311943 ATRNO75882 1429 aa16.79■□□□□ 0.28
SCFD1-201ENST00000311943 CAMTA1Q9Y6Y1 1673 aa16.79■□□□□ 0.28
SCFD1-201ENST00000311943 CCDC9Q9Y3X0 531 aaKnown RBP16.79■□□□□ 0.28
SCFD1-201ENST00000311943 RGS12O14924 1447 aa16.78■□□□□ 0.28
SCFD1-201ENST00000311943 USP35Q9P2H5 1018 aa16.78■□□□□ 0.28
SCFD1-201ENST00000311943 TRPC5Q9UL62 973 aaPredicted RBP16.78■□□□□ 0.28
SCFD1-201ENST00000311943 ANKRD36BQ8N2N9 1353 aa16.78■□□□□ 0.28
SCFD1-201ENST00000311943 GLI3P10071 1580 aa16.78■□□□□ 0.28
SCFD1-201ENST00000311943 GJD4Q96KN9 370 aaPredicted RBP16.77■□□□□ 0.28
SCFD1-201ENST00000311943 SLIT3O75094 1523 aa16.77■□□□□ 0.28
SCFD1-201ENST00000311943 EDC4Q6P2E9 1401 aaKnown RBP16.77■□□□□ 0.28
SCFD1-201ENST00000311943 KIF7Q2M1P5 1343 aa16.77■□□□□ 0.28
SCFD1-201ENST00000311943 FYB1O15117 783 aa16.77■□□□□ 0.27
SCFD1-201ENST00000311943 TTC21AQ8NDW8 1320 aa16.76■□□□□ 0.27
SCFD1-201ENST00000311943 NRAPQ86VF7 1730 aa16.76■□□□□ 0.27
SCFD1-201ENST00000311943 RBM6P78332 1123 aaKnown RBP16.76■□□□□ 0.27
SCFD1-201ENST00000311943 LARP1Q6PKG0 1096 aaKnown RBP16.75■□□□□ 0.27
SCFD1-201ENST00000311943 NSD3Q9BZ95 1437 aa16.75■□□□□ 0.27
SCFD1-201ENST00000311943 COL14A1Q05707 1796 aaKnown RBP16.75■□□□□ 0.27
SCFD1-201ENST00000311943 SOCS7O14512 581 aa16.74■□□□□ 0.27
SCFD1-201ENST00000311943 PANK3Q9H999 370 aa16.74■□□□□ 0.27
SCFD1-201ENST00000311943 OVOS2A0A0J9YW53 1432 aa16.74■□□□□ 0.27
SCFD1-201ENST00000311943 OVOS2Q6IE36 1432 aa16.74■□□□□ 0.27
SCFD1-201ENST00000311943 FAM182BQ5T319 152 aa16.74■□□□□ 0.27
SCFD1-201ENST00000311943 NFAT5O94916 1531 aa16.73■□□□□ 0.27
SCFD1-201ENST00000311943 RGPD5Q99666 1765 aa16.73■□□□□ 0.27
SCFD1-201ENST00000311943 FAM98CQ17RN3 349 aaKnown RBP16.73■□□□□ 0.27
SCFD1-201ENST00000311943 ARHGEF25Q86VW2 580 aa16.73■□□□□ 0.27
SCFD1-201ENST00000311943 BRD4O60885 1362 aaPredicted RBP16.73■□□□□ 0.27
SCFD1-201ENST00000311943 USP31Q70CQ4 1352 aa16.73■□□□□ 0.27
SCFD1-201ENST00000311943 LMO7Q8WWI1 1683 aa16.73■□□□□ 0.27
SCFD1-201ENST00000311943 CNGB1Q14028 1251 aaPredicted RBP16.72■□□□□ 0.27
SCFD1-201ENST00000311943 VPS72Q15906 364 aa16.72■□□□□ 0.27
SCFD1-201ENST00000311943 CDCA8Q53HL2 280 aa16.72■□□□□ 0.27
SCFD1-201ENST00000311943 WASHC2AQ641Q2 1341 aa16.72■□□□□ 0.27
SCFD1-201ENST00000311943 RRS1Q15050 365 aaKnown RBP16.72■□□□□ 0.27
SCFD1-201ENST00000311943 COL18A1P39060 1754 aa16.72■□□□□ 0.27
SCFD1-201ENST00000311943 CPDO75976 1380 aa16.72■□□□□ 0.27
SCFD1-201ENST00000311943 NINLQ9Y2I6 1382 aa16.72■□□□□ 0.27
SCFD1-201ENST00000311943 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.71■□□□□ 0.27
SCFD1-201ENST00000311943 NWD2Q9ULI1 1742 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 110.7 ms