RNA–Protein interactions for RNA: ENST00000306853.1

CSPG4P2Y-201, Transcript of CSPG4 pseudogene 2 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P2Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P2Y-201ENST00000306853 TMC1Q8TDI8 760 aa15.36■□□□□ 0.05
CSPG4P2Y-201ENST00000306853 PUS7Q96PZ0 661 aaKnown RBP15.36■□□□□ 0.05
CSPG4P2Y-201ENST00000306853 PHF23Q9BUL5 403 aaPredicted RBP15.36■□□□□ 0.05
CSPG4P2Y-201ENST00000306853 LRP6O75581 1613 aa15.35■□□□□ 0.05
CSPG4P2Y-201ENST00000306853 BRD4O60885 1362 aaPredicted RBP15.35■□□□□ 0.05
CSPG4P2Y-201ENST00000306853 USP6P35125 1406 aa15.34■□□□□ 0.05
CSPG4P2Y-201ENST00000306853 CRYBG1Q9Y4K1 1723 aa15.34■□□□□ 0.05
CSPG4P2Y-201ENST00000306853 HAP1P54257 671 aaPredicted RBP15.34■□□□□ 0.05
CSPG4P2Y-201ENST00000306853 PHRF1Q9P1Y6 1649 aaKnown RBP15.34■□□□□ 0.05
CSPG4P2Y-201ENST00000306853 HDGFL2Q7Z4V5 671 aaPredicted RBP15.33■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 ZNF692Q9BU19 519 aaPredicted RBP15.32■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 KTN1Q86UP2 1357 aaKnown RBP15.32■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 PIK3C2AO00443 1686 aa15.32■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 POLR3GLQ9BT43 218 aa15.31■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 TERF2IPQ9NYB0 399 aa15.31■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 CPSF1Q10570 1443 aaKnown RBP15.31■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 PLEKHG5O94827 1062 aa15.3■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 KIF20BQ96Q89 1820 aa15.29■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 CD163L1Q9NR16 1453 aa15.29■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 A0A1W2PP64 1363 aa15.29■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 ANKRD36BQ8N2N9 1353 aa15.28■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 ADAMTS2O95450 1211 aa15.28■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 ABTB2Q8N961 1025 aa15.28■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 SLC12A5Q9H2X9 1139 aa15.28■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 PLCH1Q4KWH8 1693 aa15.28■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 EDC4Q6P2E9 1401 aaKnown RBP15.27■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 TTC21AQ8NDW8 1320 aa15.27■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 ZEB1P37275 1124 aaPredicted RBP15.27■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 C8orf37Q96NL8 207 aa15.27■□□□□ 0.04
CSPG4P2Y-201ENST00000306853 USP54Q70EL1 1684 aa15.27■□□□□ 0.03
CSPG4P2Y-201ENST00000306853 NWD2Q9ULI1 1742 aa15.26■□□□□ 0.03
CSPG4P2Y-201ENST00000306853 COL14A1Q05707 1796 aaKnown RBP15.26■□□□□ 0.03
CSPG4P2Y-201ENST00000306853 SSH2Q76I76 1423 aa15.26■□□□□ 0.03
CSPG4P2Y-201ENST00000306853 TTC21BQ7Z4L5 1316 aa15.25■□□□□ 0.03
CSPG4P2Y-201ENST00000306853 NUTM2GQ5VZR2 741 aa15.25■□□□□ 0.03
CSPG4P2Y-201ENST00000306853 NLRP13Q86W25 1043 aa15.25■□□□□ 0.03
CSPG4P2Y-201ENST00000306853 CABLES1Q8TDN4 633 aa15.25■□□□□ 0.03
CSPG4P2Y-201ENST00000306853 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.25■□□□□ 0.03
CSPG4P2Y-201ENST00000306853 NLRP6P59044 892 aa15.23■□□□□ 0.03
CSPG4P2Y-201ENST00000306853 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.23■□□□□ 0.03
CSPG4P2Y-201ENST00000306853 NGLY1Q96IV0 654 aa15.23■□□□□ 0.03
CSPG4P2Y-201ENST00000306853 SLIT3O75094 1523 aa15.22■□□□□ 0.03
CSPG4P2Y-201ENST00000306853 AFF2P51816 1311 aa15.22■□□□□ 0.03
CSPG4P2Y-201ENST00000306853 ZNF772Q68DY9 489 aaPredicted RBP15.22■□□□□ 0.03
CSPG4P2Y-201ENST00000306853 LTN1O94822 1766 aa15.21■□□□□ 0.03
CSPG4P2Y-201ENST00000306853 USP19O94966 1318 aa15.21■□□□□ 0.03
CSPG4P2Y-201ENST00000306853 ANKRD26Q9UPS8 1709 aa15.2■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 NRAPQ86VF7 1730 aa15.2■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 NSD3Q9BZ95 1437 aa15.19■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 KIF7Q2M1P5 1343 aa15.18■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 NME9Q86XW9 330 aa15.18■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 PRDM11Q9NQV5 511 aa15.18■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 USP31Q70CQ4 1352 aa15.18■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 SLIT2O94813 1529 aa15.17■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 KIAA0232Q92628 1395 aa15.17■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 GCP02774 474 aa15.17■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 KCNH5Q8NCM2 988 aa15.17■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 USP21Q9UK80 565 aa15.17■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 OVOS2A0A0J9YW53 1432 aa15.17■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 OVOS2Q6IE36 1432 aa15.17■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 RGPD5Q99666 1765 aa15.16■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 C11orf95C9JLR9 678 aaPredicted RBP15.16■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 ZC3H6P61129 1189 aaKnown RBP15.16■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 NFAT5O94916 1531 aa15.16■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 LMO7Q8WWI1 1683 aa15.16■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 CPDO75976 1380 aa15.15■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 CCDC7Q96M83 1385 aa15.15■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 ZBTB7CA1YPR0 619 aa15.15■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 SOX12O15370 315 aa15.15■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 FNBP4Q8N3X1 1017 aaPredicted RBP15.15■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 COG3Q96JB2 828 aa15.15■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 RGS17Q9UGC6 210 aaPredicted RBP15.15■□□□□ 0.02
CSPG4P2Y-201ENST00000306853 TRPC5Q9UL62 973 aaPredicted RBP15.14■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 CGNL1Q0VF96 1302 aa15.14■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 ABCC6O95255 1503 aa15.13■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 FAM83GA6ND36 823 aa15.13■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 CHRNA2Q15822 529 aa15.13■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 UNC5CLQ8IV45 518 aa15.13■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 ZRANB1Q9UGI0 708 aa15.13■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 BCL9LQ86UU0 1499 aa15.13■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 ATRNO75882 1429 aa15.12■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 COL18A1P39060 1754 aa15.12■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 POTEAQ6S8J7 498 aa15.12■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 PANK3Q9H999 370 aa15.12■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 BTG4Q9NY30 223 aa15.12■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 WASHC2AQ641Q2 1341 aa15.12■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 CARD14Q9BXL6 1004 aa15.11■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 GGNBP2Q9H3C7 697 aa15.11■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 QTRT2Q9H974 415 aaKnown RBP15.11■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 CCDC9Q9Y3X0 531 aaKnown RBP15.11■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 MAP2P11137 1827 aaKnown RBP15.1■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 RXRBP28702 533 aa15.1■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 FYB1O15117 783 aa15.09■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 KNSTRNQ9Y448 316 aa15.09■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 FAM208AQ9UK61 1670 aaKnown RBP15.09■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 CAMTA1Q9Y6Y1 1673 aa15.09■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 NSD2O96028 1365 aa15.09■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 AATKQ6ZMQ8 1374 aa15.09■□□□□ 0.01
CSPG4P2Y-201ENST00000306853 GLI3P10071 1580 aa15.08■□□□□ 0
CSPG4P2Y-201ENST00000306853 EVA1CP58658 441 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms