RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 ADGRB2O60241 1585 aa8.61□□□□□ -1.03
USP47-201ENST00000305481 CDC42BPGQ6DT37 1551 aa8.61□□□□□ -1.03
USP47-201ENST00000305481 U2AF1L5P0DN76 240 aaPredicted RBP8.61□□□□□ -1.03
USP47-201ENST00000305481 U2AF1Q01081 240 aaKnown RBP eCLIP8.61□□□□□ -1.03
USP47-201ENST00000305481 EDC4Q6P2E9 1401 aaKnown RBP8.61□□□□□ -1.03
USP47-201ENST00000305481 TBX22Q9Y458 520 aa8.61□□□□□ -1.03
USP47-201ENST00000305481 ZRANB1Q9UGI0 708 aa8.61□□□□□ -1.03
USP47-201ENST00000305481 AMOTL2Q9Y2J4 779 aa8.61□□□□□ -1.03
USP47-201ENST00000305481 E9PSI1 815 aa8.6□□□□□ -1.03
USP47-201ENST00000305481 NEUROD2Q15784 382 aa8.6□□□□□ -1.03
USP47-201ENST00000305481 NME9Q86XW9 330 aa8.6□□□□□ -1.03
USP47-201ENST00000305481 CCDC136Q96JN2 1154 aa8.6□□□□□ -1.03
USP47-201ENST00000305481 PLEKHF1Q96S99 279 aa8.6□□□□□ -1.03
USP47-201ENST00000305481 POLKQ9UBT6 870 aa8.6□□□□□ -1.03
USP47-201ENST00000305481 C20orf194Q5TEA3 1177 aa8.6□□□□□ -1.03
USP47-201ENST00000305481 NKTRP30414 1462 aaKnown RBP8.59□□□□□ -1.03
USP47-201ENST00000305481 MON2Q7Z3U7 1717 aa8.59□□□□□ -1.03
USP47-201ENST00000305481 RIMS1Q86UR5 1692 aaKnown RBP8.59□□□□□ -1.03
USP47-201ENST00000305481 CEP170BQ9Y4F5 1589 aaPredicted RBP8.59□□□□□ -1.03
USP47-201ENST00000305481 AKAP12Q02952 1782 aa8.59□□□□□ -1.03
USP47-201ENST00000305481 U2SURPO15042 1029 aaKnown RBP8.58□□□□□ -1.04
USP47-201ENST00000305481 CCDC27Q2M243 656 aa8.58□□□□□ -1.04
USP47-201ENST00000305481 TOPAZ1Q8N9V7 1692 aa8.58□□□□□ -1.04
USP47-201ENST00000305481 PTCH1Q13635 1447 aa8.58□□□□□ -1.04
USP47-201ENST00000305481 NUTM2FA1L443 756 aa8.58□□□□□ -1.04
USP47-201ENST00000305481 CRBNQ96SW2 442 aa8.58□□□□□ -1.04
USP47-201ENST00000305481 DIP2AQ14689 1571 aa8.57□□□□□ -1.04
USP47-201ENST00000305481 DIAPH1O60610 1272 aaKnown RBP8.57□□□□□ -1.04
USP47-201ENST00000305481 RBM19Q9Y4C8 960 aaKnown RBP8.57□□□□□ -1.04
USP47-201ENST00000305481 ADAMTSL3P82987 1691 aa8.57□□□□□ -1.04
USP47-201ENST00000305481 PLEKHG3A1L390 1219 aa8.57□□□□□ -1.04
USP47-201ENST00000305481 NCBP3Q53F19 620 aaKnown RBP8.57□□□□□ -1.04
USP47-201ENST00000305481 WDR63Q8IWG1 891 aa8.57□□□□□ -1.04
USP47-201ENST00000305481 ZNF692Q9BU19 519 aaPredicted RBP8.57□□□□□ -1.04
USP47-201ENST00000305481 MAP2P11137 1827 aaKnown RBP8.57□□□□□ -1.04
USP47-201ENST00000305481 ITSN1Q15811 1721 aa8.57□□□□□ -1.04
USP47-201ENST00000305481 BCAR3O75815 825 aa8.57□□□□□ -1.04
USP47-201ENST00000305481 EMILIN1Q9Y6C2 1016 aa8.57□□□□□ -1.04
USP47-201ENST00000305481 ACEP12821 1306 aa8.57□□□□□ -1.04
USP47-201ENST00000305481 XRN1Q8IZH2 1706 aaKnown RBP8.56□□□□□ -1.04
USP47-201ENST00000305481 PPM1GO15355 546 aaPredicted RBP8.56□□□□□ -1.04
USP47-201ENST00000305481 ERICH6Q7L0X2 663 aa8.56□□□□□ -1.04
USP47-201ENST00000305481 AATKQ6ZMQ8 1374 aa8.56□□□□□ -1.04
USP47-201ENST00000305481 NRKQ7Z2Y5 1582 aa8.56□□□□□ -1.04
USP47-201ENST00000305481 KCNA6P17658 529 aa8.56□□□□□ -1.04
USP47-201ENST00000305481 TMPOP42166 694 aaKnown RBP8.55□□□□□ -1.04
USP47-201ENST00000305481 TRIM35Q9UPQ4 493 aa8.55□□□□□ -1.04
USP47-201ENST00000305481 TTC21BQ7Z4L5 1316 aa8.55□□□□□ -1.04
USP47-201ENST00000305481 COG3Q96JB2 828 aa8.55□□□□□ -1.04
USP47-201ENST00000305481 SSH2Q76I76 1423 aa8.55□□□□□ -1.04
USP47-201ENST00000305481 USP6P35125 1406 aa8.54□□□□□ -1.04
USP47-201ENST00000305481 IL13P35225 146 aa8.54□□□□□ -1.04
USP47-201ENST00000305481 RRS1Q15050 365 aaKnown RBP8.54□□□□□ -1.04
USP47-201ENST00000305481 RSPH6AQ9H0K4 717 aa8.54□□□□□ -1.04
USP47-201ENST00000305481 FCHSD2O94868 740 aa8.54□□□□□ -1.04
USP47-201ENST00000305481 ZNF142P52746 1687 aaPredicted RBP8.54□□□□□ -1.04
USP47-201ENST00000305481 LRRC7Q96NW7 1537 aa8.54□□□□□ -1.04
USP47-201ENST00000305481 CDK12Q9NYV4 1490 aaPredicted RBP8.54□□□□□ -1.04
USP47-201ENST00000305481 RGPD8O14715 1765 aaPredicted RBP8.53□□□□□ -1.04
USP47-201ENST00000305481 PIK3R4Q99570 1358 aa8.53□□□□□ -1.04
USP47-201ENST00000305481 ANKLE2Q86XL3 938 aa8.53□□□□□ -1.04
USP47-201ENST00000305481 PMFBP1Q8TBY8 1022 aa8.53□□□□□ -1.04
USP47-201ENST00000305481 OVOS2A0A0J9YW53 1432 aa8.53□□□□□ -1.04
USP47-201ENST00000305481 OVOS2Q6IE36 1432 aa8.53□□□□□ -1.04
USP47-201ENST00000305481 MAPK8IP3Q9UPT6 1336 aa8.52□□□□□ -1.05
USP47-201ENST00000305481 PRKAR2BP31323 418 aa8.52□□□□□ -1.05
USP47-201ENST00000305481 RARSP54136 660 aaKnown RBP8.52□□□□□ -1.05
USP47-201ENST00000305481 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.52□□□□□ -1.05
USP47-201ENST00000305481 PHACTR3Q96KR7 559 aa8.52□□□□□ -1.05
USP47-201ENST00000305481 HMOX1P09601 288 aa8.52□□□□□ -1.05
USP47-201ENST00000305481 RIPK4P57078 832 aa8.52□□□□□ -1.05
USP47-201ENST00000305481 TSR2Q969E8 191 aaKnown RBP8.51□□□□□ -1.05
USP47-201ENST00000305481 MYH16Q9H6N6 1097 aa8.51□□□□□ -1.05
USP47-201ENST00000305481 CHD2O14647 1828 aaKnown RBP8.51□□□□□ -1.05
USP47-201ENST00000305481 FANCIQ9NVI1 1328 aa8.51□□□□□ -1.05
USP47-201ENST00000305481 SETD1BQ9UPS6 1966 aaKnown RBP8.51□□□□□ -1.05
USP47-201ENST00000305481 PNNQ9H307 717 aaKnown RBP8.51□□□□□ -1.05
USP47-201ENST00000305481 NALCNQ8IZF0 1738 aa8.5□□□□□ -1.05
USP47-201ENST00000305481 USP31Q70CQ4 1352 aa8.5□□□□□ -1.05
USP47-201ENST00000305481 RBM33Q96EV2 1170 aaKnown RBP8.5□□□□□ -1.05
USP47-201ENST00000305481 PEAK1Q9H792 1746 aa8.5□□□□□ -1.05
USP47-201ENST00000305481 FMN2Q9NZ56 1722 aa8.5□□□□□ -1.05
USP47-201ENST00000305481 ANKARQ7Z5J8 1434 aa8.49□□□□□ -1.05
USP47-201ENST00000305481 IL16Q14005 1332 aa8.49□□□□□ -1.05
USP47-201ENST00000305481 KDM2BQ8NHM5 1336 aa8.49□□□□□ -1.05
USP47-201ENST00000305481 PDE3AQ14432 1141 aa8.49□□□□□ -1.05
USP47-201ENST00000305481 NGDNQ8NEJ9 315 aaKnown RBP8.49□□□□□ -1.05
USP47-201ENST00000305481 TTC21AQ8NDW8 1320 aa8.49□□□□□ -1.05
USP47-201ENST00000305481 EXOSC9Q06265 439 aaKnown RBP8.48□□□□□ -1.05
USP47-201ENST00000305481 EIF4A2Q14240 407 aaKnown RBP8.48□□□□□ -1.05
USP47-201ENST00000305481 NFE2L2Q16236 605 aa8.48□□□□□ -1.05
USP47-201ENST00000305481 SKAP1Q86WV1 359 aa8.48□□□□□ -1.05
USP47-201ENST00000305481 PANK1Q8TE04 598 aa8.48□□□□□ -1.05
USP47-201ENST00000305481 BCL2L13Q9BXK5 485 aa8.48□□□□□ -1.05
USP47-201ENST00000305481 TNNQ9UQP3 1299 aa8.48□□□□□ -1.05
USP47-201ENST00000305481 PIK3C2AO00443 1686 aa8.48□□□□□ -1.05
USP47-201ENST00000305481 HSP90AB2PQ58FF8 381 aa8.48□□□□□ -1.05
USP47-201ENST00000305481 RLBP1P12271 317 aa8.47□□□□□ -1.05
USP47-201ENST00000305481 FRAT1Q92837 279 aaPredicted RBP8.47□□□□□ -1.05
USP47-201ENST00000305481 NPHP4O75161 1426 aaPredicted RBP8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms