RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 SPATA31A3Q5VYP0 1347 aa33.85■■■■□ 3.01
HOXC9-201ENST00000303450 LMOD2Q6P5Q4 547 aa33.84■■■■□ 3.01
HOXC9-201ENST00000303450 TNS3Q68CZ2 1445 aa33.83■■■■□ 3.01
HOXC9-201ENST00000303450 MON2Q7Z3U7 1717 aa33.83■■■■□ 3.01
HOXC9-201ENST00000303450 JCADQ9P266 1359 aa33.82■■■■□ 3
HOXC9-201ENST00000303450 SSH2Q76I76 1423 aa33.79■■■■□ 3
HOXC9-201ENST00000303450 TTC21BQ7Z4L5 1316 aa33.78■■■■□ 3
HOXC9-201ENST00000303450 ARHGEF10O15013 1369 aa33.78■■■■□ 3
HOXC9-201ENST00000303450 EDC4Q6P2E9 1401 aaKnown RBP33.77■■■■□ 3
HOXC9-201ENST00000303450 PNPLA6Q8IY17 1366 aa33.77■■■■□ 3
HOXC9-201ENST00000303450 SUGP2Q8IX01 1082 aaKnown RBP eCLIP33.77■■■■□ 3
HOXC9-201ENST00000303450 PANK3Q9H999 370 aa33.77■■■■□ 3
HOXC9-201ENST00000303450 ABTB2Q8N961 1025 aa33.76■■■■□ 3
HOXC9-201ENST00000303450 TTC21AQ8NDW8 1320 aa33.76■■■□□ 2.99
HOXC9-201ENST00000303450 ALS2Q96Q42 1657 aa33.76■■■□□ 2.99
HOXC9-201ENST00000303450 NRKQ7Z2Y5 1582 aa33.75■■■□□ 2.99
HOXC9-201ENST00000303450 SHPRHQ149N8 1683 aa33.75■■■□□ 2.99
HOXC9-201ENST00000303450 CARD14Q9BXL6 1004 aa33.73■■■□□ 2.99
HOXC9-201ENST00000303450 NUTM2GQ5VZR2 741 aa33.71■■■□□ 2.99
HOXC9-201ENST00000303450 ZNF316A6NFI3 1004 aaPredicted RBP33.7■■■□□ 2.99
HOXC9-201ENST00000303450 NSD3Q9BZ95 1437 aa33.7■■■□□ 2.99
HOXC9-201ENST00000303450 PLEKHG5O94827 1062 aa33.69■■■□□ 2.98
HOXC9-201ENST00000303450 COL22A1Q8NFW1 1626 aaPredicted RBP33.68■■■□□ 2.98
HOXC9-201ENST00000303450 NLRP6P59044 892 aa33.68■■■□□ 2.98
HOXC9-201ENST00000303450 SPATA31A6Q5VVP1 1343 aa33.67■■■□□ 2.98
HOXC9-201ENST00000303450 NLRP13Q86W25 1043 aa33.66■■■□□ 2.98
HOXC9-201ENST00000303450 NME9Q86XW9 330 aa33.66■■■□□ 2.98
HOXC9-201ENST00000303450 PIK3C2AO00443 1686 aa33.66■■■□□ 2.98
HOXC9-201ENST00000303450 NUTM2BA6NNL0 878 aaPredicted RBP33.63■■■□□ 2.97
HOXC9-201ENST00000303450 NUTM2EB1AL46 878 aaPredicted RBP33.63■■■□□ 2.97
HOXC9-201ENST00000303450 NUTM2AQ8IVF1 878 aaPredicted RBP33.63■■■□□ 2.97
HOXC9-201ENST00000303450 CABLES1Q8TDN4 633 aa33.63■■■□□ 2.97
HOXC9-201ENST00000303450 HAP1P54257 671 aaPredicted RBP33.63■■■□□ 2.97
HOXC9-201ENST00000303450 KNSTRNQ9Y448 316 aa33.62■■■□□ 2.97
HOXC9-201ENST00000303450 CGNL1Q0VF96 1302 aa33.61■■■□□ 2.97
HOXC9-201ENST00000303450 ZRANB1Q9UGI0 708 aa33.6■■■□□ 2.97
HOXC9-201ENST00000303450 MED1Q15648 1581 aaPredicted RBP33.6■■■□□ 2.97
HOXC9-201ENST00000303450 FYB1O15117 783 aa33.59■■■□□ 2.97
HOXC9-201ENST00000303450 USP31Q70CQ4 1352 aa33.58■■■□□ 2.97
HOXC9-201ENST00000303450 USP19O94966 1318 aa33.56■■■□□ 2.96
HOXC9-201ENST00000303450 KIF20BQ96Q89 1820 aa33.56■■■□□ 2.96
HOXC9-201ENST00000303450 GGNBP2Q9H3C7 697 aa33.56■■■□□ 2.96
HOXC9-201ENST00000303450 DDX10Q13206 875 aaKnown RBP33.55■■■□□ 2.96
HOXC9-201ENST00000303450 COG3Q96JB2 828 aa33.55■■■□□ 2.96
HOXC9-201ENST00000303450 PER1O15534 1290 aaPredicted RBP33.54■■■□□ 2.96
HOXC9-201ENST00000303450 ABCA3Q99758 1704 aa33.54■■■□□ 2.96
HOXC9-201ENST00000303450 CRYBG1Q9Y4K1 1723 aa33.54■■■□□ 2.96
HOXC9-201ENST00000303450 LRP6O75581 1613 aa33.52■■■□□ 2.96
HOXC9-201ENST00000303450 PHRF1Q9P1Y6 1649 aaKnown RBP33.52■■■□□ 2.96
HOXC9-201ENST00000303450 MARF1Q9Y4F3 1742 aaKnown RBP33.52■■■□□ 2.96
HOXC9-201ENST00000303450 ADAMTS2O95450 1211 aa33.52■■■□□ 2.96
HOXC9-201ENST00000303450 GCP02774 474 aa33.52■■■□□ 2.96
HOXC9-201ENST00000303450 USP54Q70EL1 1684 aa33.51■■■□□ 2.96
HOXC9-201ENST00000303450 OVOS2A0A0J9YW53 1432 aa33.51■■■□□ 2.96
HOXC9-201ENST00000303450 OVOS2Q6IE36 1432 aa33.51■■■□□ 2.96
HOXC9-201ENST00000303450 MEX3CQ5U5Q3 659 aaKnown RBP33.5■■■□□ 2.95
HOXC9-201ENST00000303450 SLIT3O75094 1523 aa33.5■■■□□ 2.95
HOXC9-201ENST00000303450 KCNH5Q8NCM2 988 aa33.49■■■□□ 2.95
HOXC9-201ENST00000303450 SOX12O15370 315 aa33.48■■■□□ 2.95
HOXC9-201ENST00000303450 NSD2O96028 1365 aa33.47■■■□□ 2.95
HOXC9-201ENST00000303450 AMER1Q5JTC6 1135 aaPredicted RBP33.47■■■□□ 2.95
HOXC9-201ENST00000303450 ZC3H6P61129 1189 aaKnown RBP33.45■■■□□ 2.95
HOXC9-201ENST00000303450 C8orf37Q96NL8 207 aa33.42■■■□□ 2.94
HOXC9-201ENST00000303450 ANKRD26Q9UPS8 1709 aa33.41■■■□□ 2.94
HOXC9-201ENST00000303450 PRDM11Q9NQV5 511 aa33.41■■■□□ 2.94
HOXC9-201ENST00000303450 KIAA0232Q92628 1395 aa33.41■■■□□ 2.94
HOXC9-201ENST00000303450 CC2D1BQ5T0F9 858 aaKnown RBP33.4■■■□□ 2.94
HOXC9-201ENST00000303450 CNGB1Q14028 1251 aaPredicted RBP33.39■■■□□ 2.94
HOXC9-201ENST00000303450 NFAT5O94916 1531 aa33.39■■■□□ 2.94
HOXC9-201ENST00000303450 ZBTB7CA1YPR0 619 aa33.38■■■□□ 2.93
HOXC9-201ENST00000303450 MORC1Q86VD1 984 aa33.38■■■□□ 2.93
HOXC9-201ENST00000303450 NGLY1Q96IV0 654 aa33.38■■■□□ 2.93
HOXC9-201ENST00000303450 CPDO75976 1380 aa33.38■■■□□ 2.93
HOXC9-201ENST00000303450 NPC1L1Q9UHC9 1359 aa33.38■■■□□ 2.93
HOXC9-201ENST00000303450 FAM83GA6ND36 823 aa33.37■■■□□ 2.93
HOXC9-201ENST00000303450 FBLN1P23142 703 aa33.34■■■□□ 2.93
HOXC9-201ENST00000303450 TNNT2P45379 298 aaPredicted RBP33.34■■■□□ 2.93
HOXC9-201ENST00000303450 CHRNA2Q15822 529 aa33.34■■■□□ 2.93
HOXC9-201ENST00000303450 ARHGEF25Q86VW2 580 aa33.34■■■□□ 2.93
HOXC9-201ENST00000303450 COL14A1Q05707 1796 aaKnown RBP33.31■■■□□ 2.92
HOXC9-201ENST00000303450 LTN1O94822 1766 aa33.29■■■□□ 2.92
HOXC9-201ENST00000303450 RRS1Q15050 365 aaKnown RBP33.29■■■□□ 2.92
HOXC9-201ENST00000303450 PHF23Q9BUL5 403 aaPredicted RBP33.29■■■□□ 2.92
HOXC9-201ENST00000303450 AFF2P51816 1311 aa33.28■■■□□ 2.92
HOXC9-201ENST00000303450 FNBP4Q8N3X1 1017 aaPredicted RBP33.28■■■□□ 2.92
HOXC9-201ENST00000303450 MAP3K19Q56UN5 1328 aa33.27■■■□□ 2.92
HOXC9-201ENST00000303450 AATKQ6ZMQ8 1374 aa33.27■■■□□ 2.92
HOXC9-201ENST00000303450 BTG4Q9NY30 223 aa33.27■■■□□ 2.92
HOXC9-201ENST00000303450 PLCH1Q4KWH8 1693 aa33.27■■■□□ 2.92
HOXC9-201ENST00000303450 SLIT2O94813 1529 aa33.25■■■□□ 2.91
HOXC9-201ENST00000303450 AMPHP49418 695 aa33.25■■■□□ 2.91
HOXC9-201ENST00000303450 USP21Q9UK80 565 aa33.24■■■□□ 2.91
HOXC9-201ENST00000303450 MAP2P11137 1827 aaKnown RBP33.24■■■□□ 2.91
HOXC9-201ENST00000303450 NWD2Q9ULI1 1742 aa33.22■■■□□ 2.91
HOXC9-201ENST00000303450 EMILIN1Q9Y6C2 1016 aa33.22■■■□□ 2.91
HOXC9-201ENST00000303450 COL18A1P39060 1754 aa33.22■■■□□ 2.91
HOXC9-201ENST00000303450 LMO7Q8WWI1 1683 aa33.21■■■□□ 2.91
HOXC9-201ENST00000303450 PPM1GO15355 546 aaPredicted RBP33.21■■■□□ 2.91
HOXC9-201ENST00000303450 POLKQ9UBT6 870 aa33.21■■■□□ 2.91
HOXC9-201ENST00000303450 UNC5CLQ8IV45 518 aa33.2■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms