RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 RTN4Q9NQC3 1192 aaKnown RBP28.45■■■□□ 2.14
TPM4-201ENST00000300933 TMEM2Q9UHN6 1383 aa28.45■■■□□ 2.14
TPM4-201ENST00000300933 HDGFP51858 240 aaKnown RBP28.44■■■□□ 2.14
TPM4-201ENST00000300933 LAS1LQ9Y4W2 734 aaKnown RBP28.43■■■□□ 2.14
TPM4-201ENST00000300933 NGEFQ8N5V2 710 aa28.42■■■□□ 2.14
TPM4-201ENST00000300933 PANK1Q8TE04 598 aa28.42■■■□□ 2.14
TPM4-201ENST00000300933 TSR2Q969E8 191 aaKnown RBP28.42■■■□□ 2.14
TPM4-201ENST00000300933 CANXP27824 592 aaKnown RBP28.41■■■□□ 2.14
TPM4-201ENST00000300933 IQSEC2Q5JU85 1478 aa28.41■■■□□ 2.14
TPM4-201ENST00000300933 PPIP5K1Q6PFW1 1433 aa28.41■■■□□ 2.14
TPM4-201ENST00000300933 PHF23Q9BUL5 403 aaPredicted RBP28.41■■■□□ 2.14
TPM4-201ENST00000300933 DIAPH1O60610 1272 aaKnown RBP28.4■■■□□ 2.14
TPM4-201ENST00000300933 TNNQ9UQP3 1299 aa28.4■■■□□ 2.14
TPM4-201ENST00000300933 PLEKHF1Q96S99 279 aa28.4■■■□□ 2.14
TPM4-201ENST00000300933 POLKQ9UBT6 870 aa28.4■■■□□ 2.14
TPM4-201ENST00000300933 EMILIN1Q9Y6C2 1016 aa28.4■■■□□ 2.14
TPM4-201ENST00000300933 ROBO2Q9HCK4 1378 aa28.39■■■□□ 2.13
TPM4-201ENST00000300933 DLC1Q96QB1 1528 aa28.38■■■□□ 2.13
TPM4-201ENST00000300933 COG6Q9Y2V7 657 aa28.37■■■□□ 2.13
TPM4-201ENST00000300933 TMPOP42166 694 aaKnown RBP28.37■■■□□ 2.13
TPM4-201ENST00000300933 WDR63Q8IWG1 891 aa28.36■■■□□ 2.13
TPM4-201ENST00000300933 HMOX1P09601 288 aa28.36■■■□□ 2.13
TPM4-201ENST00000300933 CCDC61Q9Y6R9 512 aa28.36■■■□□ 2.13
TPM4-201ENST00000300933 PRR36Q9H6K5 1346 aa28.36■■■□□ 2.13
TPM4-201ENST00000300933 MAPK8IP3Q9UPT6 1336 aa28.35■■■□□ 2.13
TPM4-201ENST00000300933 NEFMP07197 916 aa28.35■■■□□ 2.13
TPM4-201ENST00000300933 RARSP54136 660 aaKnown RBP28.35■■■□□ 2.13
TPM4-201ENST00000300933 RRS1Q15050 365 aaKnown RBP28.35■■■□□ 2.13
TPM4-201ENST00000300933 CLUAP1Q96AJ1 413 aa28.34■■■□□ 2.13
TPM4-201ENST00000300933 TRIM35Q9UPQ4 493 aa28.34■■■□□ 2.13
TPM4-201ENST00000300933 COL3A1P02461 1466 aaPredicted RBP28.33■■■□□ 2.13
TPM4-201ENST00000300933 RIPK4P57078 832 aa28.33■■■□□ 2.13
TPM4-201ENST00000300933 UBR1Q8IWV7 1749 aa28.32■■■□□ 2.12
TPM4-201ENST00000300933 ADAMTS13Q76LX8 1427 aa28.32■■■□□ 2.12
TPM4-201ENST00000300933 TCERG1O14776 1098 aaKnown RBP28.32■■■□□ 2.12
TPM4-201ENST00000300933 CCDC27Q2M243 656 aa28.31■■■□□ 2.12
TPM4-201ENST00000300933 KDM2BQ8NHM5 1336 aa28.3■■■□□ 2.12
TPM4-201ENST00000300933 PDE4AP27815 886 aa28.3■■■□□ 2.12
TPM4-201ENST00000300933 SOX12O15370 315 aa28.29■■■□□ 2.12
TPM4-201ENST00000300933 PRKAR2BP31323 418 aa28.29■■■□□ 2.12
TPM4-201ENST00000300933 RLBP1P12271 317 aa28.28■■■□□ 2.12
TPM4-201ENST00000300933 EID1Q9Y6B2 187 aa28.28■■■□□ 2.12
TPM4-201ENST00000300933 ATP7BP35670 1465 aa28.28■■■□□ 2.12
TPM4-201ENST00000300933 CPSF1Q10570 1443 aaKnown RBP28.27■■■□□ 2.12
TPM4-201ENST00000300933 MYH16Q9H6N6 1097 aa28.27■■■□□ 2.12
TPM4-201ENST00000300933 MED14O60244 1454 aa28.27■■■□□ 2.12
TPM4-201ENST00000300933 PHACTR3Q96KR7 559 aa28.27■■■□□ 2.12
TPM4-201ENST00000300933 EXOSC9Q06265 439 aaKnown RBP28.26■■■□□ 2.12
TPM4-201ENST00000300933 PNPLA6Q8IY17 1366 aa28.26■■■□□ 2.11
TPM4-201ENST00000300933 KIF20BQ96Q89 1820 aa28.26■■■□□ 2.11
TPM4-201ENST00000300933 CPS1P31327 1500 aa28.25■■■□□ 2.11
TPM4-201ENST00000300933 IGHDP01880 384 aa28.25■■■□□ 2.11
TPM4-201ENST00000300933 RGS3P49796 1198 aa28.25■■■□□ 2.11
TPM4-201ENST00000300933 COG3Q96JB2 828 aa28.25■■■□□ 2.11
TPM4-201ENST00000300933 AMOTL2Q9Y2J4 779 aa28.25■■■□□ 2.11
TPM4-201ENST00000300933 ANKRD26Q9UPS8 1709 aa28.25■■■□□ 2.11
TPM4-201ENST00000300933 THUMPD2Q9BTF0 503 aaKnown RBP28.25■■■□□ 2.11
TPM4-201ENST00000300933 CENPQQ7L2Z9 268 aaPredicted RBP28.24■■■□□ 2.11
TPM4-201ENST00000300933 FAM135BQ49AJ0 1406 aa28.24■■■□□ 2.11
TPM4-201ENST00000300933 PMFBP1Q8TBY8 1022 aa28.23■■■□□ 2.11
TPM4-201ENST00000300933 MAP2P11137 1827 aaKnown RBP28.23■■■□□ 2.11
TPM4-201ENST00000300933 EDC4Q6P2E9 1401 aaKnown RBP28.23■■■□□ 2.11
TPM4-201ENST00000300933 PTPRUQ92729 1446 aa28.22■■■□□ 2.11
TPM4-201ENST00000300933 TECPR2O15040 1411 aa28.21■■■□□ 2.11
TPM4-201ENST00000300933 PDE3AQ14432 1141 aa28.21■■■□□ 2.11
TPM4-201ENST00000300933 RSPH6AQ9H0K4 717 aa28.21■■■□□ 2.11
TPM4-201ENST00000300933 ACEP12821 1306 aa28.21■■■□□ 2.11
TPM4-201ENST00000300933 SIRT1Q96EB6 747 aa28.21■■■□□ 2.11
TPM4-201ENST00000300933 BACH2Q9BYV9 841 aa28.21■■■□□ 2.11
TPM4-201ENST00000300933 PLEKHG1Q9ULL1 1385 aa28.21■■■□□ 2.11
TPM4-201ENST00000300933 FCHSD2O94868 740 aa28.19■■■□□ 2.1
TPM4-201ENST00000300933 ADGRB2O60241 1585 aa28.19■■■□□ 2.1
TPM4-201ENST00000300933 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.17■■■□□ 2.1
TPM4-201ENST00000300933 IL13P35225 146 aa28.17■■■□□ 2.1
TPM4-201ENST00000300933 C3P01024 1663 aa28.16■■■□□ 2.1
TPM4-201ENST00000300933 RBM33Q96EV2 1170 aaKnown RBP28.15■■■□□ 2.1
TPM4-201ENST00000300933 SMC4Q9NTJ3 1288 aa28.15■■■□□ 2.1
TPM4-201ENST00000300933 MS4A1P11836 297 aa28.14■■■□□ 2.1
TPM4-201ENST00000300933 SSH1Q8WYL5 1049 aa28.14■■■□□ 2.1
TPM4-201ENST00000300933 ZNF692Q9BU19 519 aaPredicted RBP28.14■■■□□ 2.1
TPM4-201ENST00000300933 THEMISQ8N1K5 641 aaPredicted RBP28.14■■■□□ 2.09
TPM4-201ENST00000300933 ZBTB4Q9P1Z0 1013 aaPredicted RBP28.14■■■□□ 2.09
TPM4-201ENST00000300933 LRRC7Q96NW7 1537 aa28.13■■■□□ 2.09
TPM4-201ENST00000300933 TTC21BQ7Z4L5 1316 aa28.13■■■□□ 2.09
TPM4-201ENST00000300933 CDC42BPGQ6DT37 1551 aa28.12■■■□□ 2.09
TPM4-201ENST00000300933 USP35Q9P2H5 1018 aa28.12■■■□□ 2.09
TPM4-201ENST00000300933 PCDHB15Q9Y5E8 787 aa28.11■■■□□ 2.09
TPM4-201ENST00000300933 PNNQ9H307 717 aaKnown RBP28.11■■■□□ 2.09
TPM4-201ENST00000300933 KNDC1Q76NI1 1749 aa28.11■■■□□ 2.09
TPM4-201ENST00000300933 ELL2O00472 640 aaPredicted RBP28.1■■■□□ 2.09
TPM4-201ENST00000300933 FAM83GA6ND36 823 aa28.1■■■□□ 2.09
TPM4-201ENST00000300933 AEBP1Q8IUX7 1158 aa28.1■■■□□ 2.09
TPM4-201ENST00000300933 DCTN1Q14203 1278 aa28.09■■■□□ 2.09
TPM4-201ENST00000300933 TBX22Q9Y458 520 aa28.08■■■□□ 2.09
TPM4-201ENST00000300933 FER1L4A9Z1Z3 1794 aa28.07■■■□□ 2.08
TPM4-201ENST00000300933 KCNA6P17658 529 aa28.07■■■□□ 2.08
TPM4-201ENST00000300933 FTSJ3Q8IY81 847 aaKnown RBP28.07■■■□□ 2.08
TPM4-201ENST00000300933 NFE2L2Q16236 605 aa28.07■■■□□ 2.08
TPM4-201ENST00000300933 NCBP3Q53F19 620 aaKnown RBP28.07■■■□□ 2.08
TPM4-201ENST00000300933 HSP90AB2PQ58FF8 381 aa28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms