RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 TRAK2O60296 914 aa7.81□□□□□ -1.16
VPS35-201ENST00000299138 HMMRO75330 724 aa7.81□□□□□ -1.16
VPS35-201ENST00000299138 SMC5Q8IY18 1101 aa7.81□□□□□ -1.16
VPS35-201ENST00000299138 ASXL2Q76L83 1435 aa7.81□□□□□ -1.16
VPS35-201ENST00000299138 KIF24Q5T7B8 1368 aa7.81□□□□□ -1.16
VPS35-201ENST00000299138 FSD2A1L4K1 749 aa7.81□□□□□ -1.16
VPS35-201ENST00000299138 ESF1Q9H501 851 aaKnown RBP7.81□□□□□ -1.16
VPS35-201ENST00000299138 HDAC5Q9UQL6 1122 aa7.81□□□□□ -1.16
VPS35-201ENST00000299138 SPAG9O60271 1321 aaKnown RBP7.81□□□□□ -1.16
VPS35-201ENST00000299138 OS9Q13438 667 aaPredicted RBP7.81□□□□□ -1.16
VPS35-201ENST00000299138 SKIDA1Q1XH10 827 aa7.81□□□□□ -1.16
VPS35-201ENST00000299138 MVPQ14764 893 aaKnown RBP7.81□□□□□ -1.16
VPS35-201ENST00000299138 FOXD4L1Q9NU39 408 aa7.81□□□□□ -1.16
VPS35-201ENST00000299138 TERF2IPQ9NYB0 399 aa7.81□□□□□ -1.16
VPS35-201ENST00000299138 BCCIPQ9P287 314 aaKnown RBP eCLIP7.81□□□□□ -1.16
VPS35-201ENST00000299138 CROCC2H7BZ55 1655 aa7.81□□□□□ -1.16
VPS35-201ENST00000299138 TTC37Q6PGP7 1564 aa7.8□□□□□ -1.16
VPS35-201ENST00000299138 ST18O60284 1047 aa7.8□□□□□ -1.16
VPS35-201ENST00000299138 LETM1O95202 739 aaPredicted RBP7.8□□□□□ -1.16
VPS35-201ENST00000299138 CHMP4CQ96CF2 233 aa7.8□□□□□ -1.16
VPS35-201ENST00000299138 ABCA8O94911 1581 aa7.8□□□□□ -1.16
VPS35-201ENST00000299138 REC8O95072 547 aa7.8□□□□□ -1.16
VPS35-201ENST00000299138 A2MP01023 1474 aa7.8□□□□□ -1.16
VPS35-201ENST00000299138 ATP6V1DQ9Y5K8 247 aa7.8□□□□□ -1.16
VPS35-201ENST00000299138 BMP2KLQ5H9B9 411 aa7.8□□□□□ -1.16
VPS35-201ENST00000299138 GRPEL1Q9HAV7 217 aa7.8□□□□□ -1.16
VPS35-201ENST00000299138 PTPRTO14522 1441 aa7.8□□□□□ -1.16
VPS35-201ENST00000299138 EVC2Q86UK5 1308 aa7.8□□□□□ -1.16
VPS35-201ENST00000299138 CCDC66A2RUB6 948 aa7.79□□□□□ -1.16
VPS35-201ENST00000299138 TAF3Q5VWG9 929 aa7.79□□□□□ -1.16
VPS35-201ENST00000299138 CWC15Q9P013 229 aaKnown RBP7.79□□□□□ -1.16
VPS35-201ENST00000299138 BRPF3Q9ULD4 1205 aa7.79□□□□□ -1.16
VPS35-201ENST00000299138 APAF1O14727 1248 aa7.79□□□□□ -1.16
VPS35-201ENST00000299138 KLHL40Q2TBA0 621 aa7.79□□□□□ -1.16
VPS35-201ENST00000299138 CCDC39Q9UFE4 941 aa7.79□□□□□ -1.16
VPS35-201ENST00000299138 TNNT1P13805 278 aa7.79□□□□□ -1.16
VPS35-201ENST00000299138 BRPF1P55201 1214 aaPredicted RBP7.79□□□□□ -1.16
VPS35-201ENST00000299138 FAM193AP78312 1265 aa7.79□□□□□ -1.16
VPS35-201ENST00000299138 CLEC17AQ6ZS10 378 aa7.79□□□□□ -1.16
VPS35-201ENST00000299138 CDCA7LQ96GN5 454 aa7.79□□□□□ -1.16
VPS35-201ENST00000299138 E9PCH4 1651 aa7.78□□□□□ -1.16
VPS35-201ENST00000299138 CCDC70Q6NSX1 233 aa7.78□□□□□ -1.16
VPS35-201ENST00000299138 ATP10BO94823 1461 aa7.78□□□□□ -1.16
VPS35-201ENST00000299138 PES1O00541 588 aaKnown RBP7.78□□□□□ -1.16
VPS35-201ENST00000299138 ARHGAP5Q13017 1502 aa7.78□□□□□ -1.16
VPS35-201ENST00000299138 CDC45O75419 566 aa7.78□□□□□ -1.16
VPS35-201ENST00000299138 ANKRD36BQ8N2N9 1353 aa7.78□□□□□ -1.16
VPS35-201ENST00000299138 PLCH2O75038 1416 aa7.78□□□□□ -1.16
VPS35-201ENST00000299138 FOXD4L5Q5VV16 416 aaPredicted RBP7.78□□□□□ -1.16
VPS35-201ENST00000299138 PDCL2Q8N4E4 241 aa7.78□□□□□ -1.16
VPS35-201ENST00000299138 FOXD4L4Q8WXT5 416 aaPredicted RBP7.78□□□□□ -1.16
VPS35-201ENST00000299138 STAG3Q9UJ98 1225 aa7.78□□□□□ -1.16
VPS35-201ENST00000299138 IQGAP3Q86VI3 1631 aa7.77□□□□□ -1.16
VPS35-201ENST00000299138 GPATCH11Q8N954 259 aa7.77□□□□□ -1.16
VPS35-201ENST00000299138 VGFO15240 615 aaPredicted RBP7.77□□□□□ -1.17
VPS35-201ENST00000299138 RARSP54136 660 aaKnown RBP7.77□□□□□ -1.17
VPS35-201ENST00000299138 RBM10P98175 930 aaKnown RBP7.77□□□□□ -1.17
VPS35-201ENST00000299138 NEUROD2Q15784 382 aa7.77□□□□□ -1.17
VPS35-201ENST00000299138 TRPM2O94759 1503 aa7.77□□□□□ -1.17
VPS35-201ENST00000299138 UVSSAQ2YD98 709 aa7.76□□□□□ -1.17
VPS35-201ENST00000299138 PDZRN3Q9UPQ7 1066 aa7.76□□□□□ -1.17
VPS35-201ENST00000299138 DISP3Q9P2K9 1392 aa7.76□□□□□ -1.17
VPS35-201ENST00000299138 RUFY1Q96T51 708 aa7.76□□□□□ -1.17
VPS35-201ENST00000299138 TSPYL1Q9H0U9 437 aa7.76□□□□□ -1.17
VPS35-201ENST00000299138 CAVIN1Q6NZI2 390 aaKnown RBP7.76□□□□□ -1.17
VPS35-201ENST00000299138 AK7Q96M32 723 aa7.76□□□□□ -1.17
VPS35-201ENST00000299138 GNAI1P63096 354 aa7.76□□□□□ -1.17
VPS35-201ENST00000299138 TRPM1Q7Z4N2 1603 aa7.76□□□□□ -1.17
VPS35-201ENST00000299138 FANCAO15360 1455 aa7.76□□□□□ -1.17
VPS35-201ENST00000299138 KDM6BO15054 1643 aa7.76□□□□□ -1.17
VPS35-201ENST00000299138 DYNC1I1O14576 645 aa7.75□□□□□ -1.17
VPS35-201ENST00000299138 SMC4Q9NTJ3 1288 aa7.75□□□□□ -1.17
VPS35-201ENST00000299138 ZFYVE9O95405 1425 aa7.75□□□□□ -1.17
VPS35-201ENST00000299138 TBC1D2Q9BYX2 928 aa7.75□□□□□ -1.17
VPS35-201ENST00000299138 ATF7IPQ6VMQ6 1270 aa7.75□□□□□ -1.17
VPS35-201ENST00000299138 HDGFL2Q7Z4V5 671 aaPredicted RBP7.75□□□□□ -1.17
VPS35-201ENST00000299138 KIF3BO15066 747 aa7.75□□□□□ -1.17
VPS35-201ENST00000299138 PRIMPOLQ96LW4 560 aa7.75□□□□□ -1.17
VPS35-201ENST00000299138 R3HCC1Q9Y3T6 440 aaKnown RBP7.75□□□□□ -1.17
VPS35-201ENST00000299138 UHRF1BP1LA0JNW5 1464 aa7.75□□□□□ -1.17
VPS35-201ENST00000299138 OFD1O75665 1012 aa7.75□□□□□ -1.17
VPS35-201ENST00000299138 PPP1R9BQ96SB3 815 aa7.75□□□□□ -1.17
VPS35-201ENST00000299138 COG6Q9Y2V7 657 aa7.75□□□□□ -1.17
VPS35-201ENST00000299138 K7ELQ4 463 aaPredicted RBP7.74□□□□□ -1.17
VPS35-201ENST00000299138 INTS3Q68E01 1043 aaKnown RBP7.74□□□□□ -1.17
VPS35-201ENST00000299138 PLIN1O60240 522 aa7.74□□□□□ -1.17
VPS35-201ENST00000299138 NASPP49321 788 aaPredicted RBP7.74□□□□□ -1.17
VPS35-201ENST00000299138 TCP11L2Q8N4U5 519 aa7.74□□□□□ -1.17
VPS35-201ENST00000299138 ANTXR1Q9H6X2 564 aa7.74□□□□□ -1.17
VPS35-201ENST00000299138 SOS1Q07889 1333 aaPredicted RBP7.74□□□□□ -1.17
VPS35-201ENST00000299138 TRAPPC8Q9Y2L5 1435 aa7.74□□□□□ -1.17
VPS35-201ENST00000299138 CAVIN2O95810 425 aa7.74□□□□□ -1.17
VPS35-201ENST00000299138 DIAPH3Q9NSV4 1193 aa7.74□□□□□ -1.17
VPS35-201ENST00000299138 IBSPP21815 317 aaPredicted RBP7.74□□□□□ -1.17
VPS35-201ENST00000299138 RPAP2Q8IXW5 612 aaPredicted RBP7.74□□□□□ -1.17
VPS35-201ENST00000299138 GIMAP7Q8NHV1 300 aa7.74□□□□□ -1.17
VPS35-201ENST00000299138 KIAA1210Q9ULL0 1709 aa7.74□□□□□ -1.17
VPS35-201ENST00000299138 NOL8Q76FK4 1167 aaKnown RBP7.73□□□□□ -1.17
VPS35-201ENST00000299138 DDX49Q9Y6V7 483 aaKnown RBP7.73□□□□□ -1.17
VPS35-201ENST00000299138 XRCC6P12956 609 aaKnown RBP eCLIP7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms