RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 TRIM6-TRIM34B2RNG4 842 aa18.93■□□□□ 0.62
SHH-201ENST00000297261 KIAA1211Q6ZU35 1233 aa18.93■□□□□ 0.62
SHH-201ENST00000297261 BCAR3O75815 825 aa18.93■□□□□ 0.62
SHH-201ENST00000297261 NUTM2GQ5VZR2 741 aa18.93■□□□□ 0.62
SHH-201ENST00000297261 DZIP1LQ8IYY4 767 aaKnown RBP18.93■□□□□ 0.62
SHH-201ENST00000297261 TNRQ92752 1358 aa18.93■□□□□ 0.62
SHH-201ENST00000297261 UGGT1Q9NYU2 1555 aa18.92■□□□□ 0.62
SHH-201ENST00000297261 CCDC61Q9Y6R9 512 aa18.92■□□□□ 0.62
SHH-201ENST00000297261 A0A0G2JS52 829 aa18.91■□□□□ 0.62
SHH-201ENST00000297261 MCTP1Q6DN14 999 aa18.9■□□□□ 0.62
SHH-201ENST00000297261 TRPM2O94759 1503 aa18.89■□□□□ 0.61
SHH-201ENST00000297261 KDM5CP41229 1560 aa18.89■□□□□ 0.61
SHH-201ENST00000297261 A0A0U1RQG5 324 aaPredicted RBP18.89■□□□□ 0.61
SHH-201ENST00000297261 PRKAR2BP31323 418 aa18.89■□□□□ 0.61
SHH-201ENST00000297261 IQGAP3Q86VI3 1631 aa18.89■□□□□ 0.61
SHH-201ENST00000297261 PDZRN3Q9UPQ7 1066 aa18.89■□□□□ 0.61
SHH-201ENST00000297261 ESPNB1AK53 854 aa18.88■□□□□ 0.61
SHH-201ENST00000297261 NLRP6P59044 892 aa18.88■□□□□ 0.61
SHH-201ENST00000297261 PSME1Q06323 249 aa18.88■□□□□ 0.61
SHH-201ENST00000297261 C20orf194Q5TEA3 1177 aa18.88■□□□□ 0.61
SHH-201ENST00000297261 ZNF692Q9BU19 519 aaPredicted RBP18.88■□□□□ 0.61
SHH-201ENST00000297261 RIMS2Q9UQ26 1411 aa18.88■□□□□ 0.61
SHH-201ENST00000297261 SLC4A10Q6U841 1118 aa18.88■□□□□ 0.61
SHH-201ENST00000297261 RNF214Q8ND24 703 aa18.88■□□□□ 0.61
SHH-201ENST00000297261 CARD14Q9BXL6 1004 aa18.88■□□□□ 0.61
SHH-201ENST00000297261 DDX19BQ9UMR2 479 aa18.88■□□□□ 0.61
SHH-201ENST00000297261 ZMYM3Q14202 1370 aa18.88■□□□□ 0.61
SHH-201ENST00000297261 WASLO00401 505 aaPredicted RBP18.88■□□□□ 0.61
SHH-201ENST00000297261 ASXL1Q8IXJ9 1541 aa18.88■□□□□ 0.61
SHH-201ENST00000297261 PTPRTO14522 1441 aa18.87■□□□□ 0.61
SHH-201ENST00000297261 PHF14O94880 888 aa18.87■□□□□ 0.61
SHH-201ENST00000297261 UNC13BO14795 1591 aa18.87■□□□□ 0.61
SHH-201ENST00000297261 ANKLE2Q86XL3 938 aa18.87■□□□□ 0.61
SHH-201ENST00000297261 MCM4P33991 863 aa18.86■□□□□ 0.61
SHH-201ENST00000297261 TNNT3P45378 269 aaPredicted RBP18.86■□□□□ 0.61
SHH-201ENST00000297261 ABCA9Q8IUA7 1624 aa18.86■□□□□ 0.61
SHH-201ENST00000297261 CSB-PGBD3P0DP91 1061 aa18.86■□□□□ 0.61
SHH-201ENST00000297261 HECW2Q9P2P5 1572 aa18.86■□□□□ 0.61
SHH-201ENST00000297261 RRS1Q15050 365 aaKnown RBP18.86■□□□□ 0.61
SHH-201ENST00000297261 GRPEL1Q9HAV7 217 aa18.85■□□□□ 0.61
SHH-201ENST00000297261 UBE2Q2Q8WVN8 375 aa18.84■□□□□ 0.61
SHH-201ENST00000297261 AMOTL2Q9Y2J4 779 aa18.84■□□□□ 0.61
SHH-201ENST00000297261 NME9Q86XW9 330 aa18.84■□□□□ 0.61
SHH-201ENST00000297261 PRDM15P57071 1507 aaPredicted RBP18.84■□□□□ 0.61
SHH-201ENST00000297261 TPM2P07951 284 aa18.83■□□□□ 0.61
SHH-201ENST00000297261 CSPP1Q1MSJ5 1256 aa18.83■□□□□ 0.61
SHH-201ENST00000297261 CAVIN1Q6NZI2 390 aaKnown RBP18.83■□□□□ 0.61
SHH-201ENST00000297261 RRP9O43818 475 aaKnown RBP18.83■□□□□ 0.6
SHH-201ENST00000297261 WWC1Q8IX03 1113 aa18.82■□□□□ 0.6
SHH-201ENST00000297261 TSR2Q969E8 191 aaKnown RBP18.82■□□□□ 0.6
SHH-201ENST00000297261 HMMRO75330 724 aa18.82■□□□□ 0.6
SHH-201ENST00000297261 SLFN5Q08AF3 891 aa18.82■□□□□ 0.6
SHH-201ENST00000297261 ZNF771Q7L3S4 317 aaPredicted RBP18.82■□□□□ 0.6
SHH-201ENST00000297261 ABTB2Q8N961 1025 aa18.82■□□□□ 0.6
SHH-201ENST00000297261 TSPOAP1O95153 1857 aa18.81■□□□□ 0.6
SHH-201ENST00000297261 ESCO1Q5FWF5 840 aa18.81■□□□□ 0.6
SHH-201ENST00000297261 ANKRD36BQ8N2N9 1353 aa18.81■□□□□ 0.6
SHH-201ENST00000297261 NUCB2P80303 420 aa18.8■□□□□ 0.6
SHH-201ENST00000297261 RILPL2Q969X0 211 aa18.8■□□□□ 0.6
SHH-201ENST00000297261 TET3O43151 1660 aa18.8■□□□□ 0.6
SHH-201ENST00000297261 STK31Q9BXU1 1019 aa18.8■□□□□ 0.6
SHH-201ENST00000297261 EXOSC9Q06265 439 aaKnown RBP18.79■□□□□ 0.6
SHH-201ENST00000297261 PDE3AQ14432 1141 aa18.79■□□□□ 0.6
SHH-201ENST00000297261 YTHDC2Q9H6S0 1430 aaKnown RBP18.79■□□□□ 0.6
SHH-201ENST00000297261 NINLQ9Y2I6 1382 aa18.78■□□□□ 0.6
SHH-201ENST00000297261 FBLN1P23142 703 aa18.78■□□□□ 0.6
SHH-201ENST00000297261 MPNDQ8N594 471 aa18.78■□□□□ 0.6
SHH-201ENST00000297261 MAP7D2Q96T17 732 aa18.78■□□□□ 0.6
SHH-201ENST00000297261 GNAI1P63096 354 aa18.78■□□□□ 0.6
SHH-201ENST00000297261 PROSER2Q86WR7 435 aaPredicted RBP18.78■□□□□ 0.6
SHH-201ENST00000297261 RBM33Q96EV2 1170 aaKnown RBP18.78■□□□□ 0.6
SHH-201ENST00000297261 NSD2O96028 1365 aa18.77■□□□□ 0.6
SHH-201ENST00000297261 FYB1O15117 783 aa18.77■□□□□ 0.6
SHH-201ENST00000297261 WDR63Q8IWG1 891 aa18.77■□□□□ 0.6
SHH-201ENST00000297261 CHMP3Q9Y3E7 222 aa18.77■□□□□ 0.6
SHH-201ENST00000297261 EMILIN1Q9Y6C2 1016 aa18.77■□□□□ 0.6
SHH-201ENST00000297261 SULT6B1Q6IMI4 303 aa18.77■□□□□ 0.6
SHH-201ENST00000297261 ZNF592Q92610 1267 aa18.77■□□□□ 0.59
SHH-201ENST00000297261 EFCAB6Q5THR3 1501 aa18.76■□□□□ 0.59
SHH-201ENST00000297261 BCL11BQ9C0K0 894 aaPredicted RBP18.76■□□□□ 0.59
SHH-201ENST00000297261 TMPOP42166 694 aaKnown RBP18.75■□□□□ 0.59
SHH-201ENST00000297261 REC8O95072 547 aa18.74■□□□□ 0.59
SHH-201ENST00000297261 CCDC173Q0VFZ6 552 aa18.74■□□□□ 0.59
SHH-201ENST00000297261 PUS7Q96PZ0 661 aaKnown RBP18.74■□□□□ 0.59
SHH-201ENST00000297261 CLTCL1P53675 1640 aa18.74■□□□□ 0.59
SHH-201ENST00000297261 ABCC3O15438 1527 aa18.74■□□□□ 0.59
SHH-201ENST00000297261 FCHSD2O94868 740 aa18.74■□□□□ 0.59
SHH-201ENST00000297261 ATF3P18847 181 aa18.74■□□□□ 0.59
SHH-201ENST00000297261 DUSP27Q5VZP5 1158 aa18.74■□□□□ 0.59
SHH-201ENST00000297261 PRPF40AO75400 957 aaKnown RBP18.74■□□□□ 0.59
SHH-201ENST00000297261 MYOM2P54296 1465 aa18.73■□□□□ 0.59
SHH-201ENST00000297261 A0A1W2PP64 1363 aa18.72■□□□□ 0.59
SHH-201ENST00000297261 KIF16BQ96L93 1317 aa18.72■□□□□ 0.59
SHH-201ENST00000297261 AAMPQ13685 434 aa18.72■□□□□ 0.59
SHH-201ENST00000297261 LRPPRCP42704 1394 aaKnown RBP18.72■□□□□ 0.59
SHH-201ENST00000297261 ZMYND15Q9H091 742 aa18.72■□□□□ 0.59
SHH-201ENST00000297261 PIK3C2GO75747 1445 aa18.71■□□□□ 0.59
SHH-201ENST00000297261 MAGI2Q86UL8 1455 aa18.71■□□□□ 0.58
SHH-201ENST00000297261 BCORL1Q5H9F3 1711 aa18.7■□□□□ 0.58
SHH-201ENST00000297261 ANO2Q9NQ90 1003 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms