RNA–Protein interactions for RNA: ENST00000296682.3

PRDM9-201, Transcript of PR/SET domain 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRDM9, Length 3,691 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM9-201ENST00000296682 CPS1P31327 1500 aa12.06□□□□□ -0.48
PRDM9-201ENST00000296682 TERF2IPQ9NYB0 399 aa12.06□□□□□ -0.48
PRDM9-201ENST00000296682 NCKAP5LQ9HCH0 1330 aa12.06□□□□□ -0.48
PRDM9-201ENST00000296682 TSR2Q969E8 191 aaKnown RBP12.06□□□□□ -0.48
PRDM9-201ENST00000296682 SLC26A8Q96RN1 970 aa12.06□□□□□ -0.48
PRDM9-201ENST00000296682 DUSP27Q5VZP5 1158 aa12.05□□□□□ -0.48
PRDM9-201ENST00000296682 SLC52A1Q9NWF4 448 aa12.05□□□□□ -0.48
PRDM9-201ENST00000296682 SLC4A3P48751 1232 aa12.05□□□□□ -0.48
PRDM9-201ENST00000296682 NALCNQ8IZF0 1738 aa12.04□□□□□ -0.48
PRDM9-201ENST00000296682 TECPR2O15040 1411 aa12.03□□□□□ -0.48
PRDM9-201ENST00000296682 PAK3O75914 559 aaPredicted RBP12.03□□□□□ -0.48
PRDM9-201ENST00000296682 PDE4AP27815 886 aa12.03□□□□□ -0.48
PRDM9-201ENST00000296682 FTSJ3Q8IY81 847 aaKnown RBP12.03□□□□□ -0.48
PRDM9-201ENST00000296682 C3P01024 1663 aa12.03□□□□□ -0.48
PRDM9-201ENST00000296682 RBM33Q96EV2 1170 aaKnown RBP12.02□□□□□ -0.48
PRDM9-201ENST00000296682 A2ML1A8K2U0 1454 aa12.02□□□□□ -0.48
PRDM9-201ENST00000296682 SLFN5Q08AF3 891 aa12.02□□□□□ -0.49
PRDM9-201ENST00000296682 WWC1Q8IX03 1113 aa12.02□□□□□ -0.49
PRDM9-201ENST00000296682 E9PSI1 815 aa12.02□□□□□ -0.49
PRDM9-201ENST00000296682 NOP58Q9Y2X3 529 aaKnown RBP12.02□□□□□ -0.49
PRDM9-201ENST00000296682 RUNDC1Q96C34 613 aa12.01□□□□□ -0.49
PRDM9-201ENST00000296682 ANKRD36BQ8N2N9 1353 aa12.01□□□□□ -0.49
PRDM9-201ENST00000296682 RTL5Q5HYW3 569 aaPredicted RBP12.01□□□□□ -0.49
PRDM9-201ENST00000296682 ZRANB1Q9UGI0 708 aa12.01□□□□□ -0.49
PRDM9-201ENST00000296682 TNNQ9UQP3 1299 aa12.01□□□□□ -0.49
PRDM9-201ENST00000296682 THUMPD2Q9BTF0 503 aaKnown RBP12□□□□□ -0.49
PRDM9-201ENST00000296682 RIPK4P57078 832 aa12□□□□□ -0.49
PRDM9-201ENST00000296682 NUTM2GQ5VZR2 741 aa12□□□□□ -0.49
PRDM9-201ENST00000296682 ABCC11Q96J66 1382 aa12□□□□□ -0.49
PRDM9-201ENST00000296682 RRS1Q15050 365 aaKnown RBP11.99□□□□□ -0.49
PRDM9-201ENST00000296682 SMC4Q9NTJ3 1288 aa11.99□□□□□ -0.49
PRDM9-201ENST00000296682 PMFBP1Q8TBY8 1022 aa11.99□□□□□ -0.49
PRDM9-201ENST00000296682 LMOD2Q6P5Q4 547 aa11.98□□□□□ -0.49
PRDM9-201ENST00000296682 ATP7BP35670 1465 aa11.98□□□□□ -0.49
PRDM9-201ENST00000296682 DIAPH1O60610 1272 aaKnown RBP11.98□□□□□ -0.49
PRDM9-201ENST00000296682 PNPLA6Q8IY17 1366 aa11.97□□□□□ -0.49
PRDM9-201ENST00000296682 LRRC7Q96NW7 1537 aa11.97□□□□□ -0.49
PRDM9-201ENST00000296682 TSPOAP1O95153 1857 aa11.97□□□□□ -0.49
PRDM9-201ENST00000296682 FYB1O15117 783 aa11.97□□□□□ -0.49
PRDM9-201ENST00000296682 NME9Q86XW9 330 aa11.97□□□□□ -0.49
PRDM9-201ENST00000296682 RGPD1P0DJD0 1748 aa11.97□□□□□ -0.49
PRDM9-201ENST00000296682 ITSN1Q15811 1721 aa11.97□□□□□ -0.49
PRDM9-201ENST00000296682 NKTRP30414 1462 aaKnown RBP11.96□□□□□ -0.49
PRDM9-201ENST00000296682 ITPRIPQ8IWB1 547 aa11.96□□□□□ -0.49
PRDM9-201ENST00000296682 EXOSC9Q06265 439 aaKnown RBP11.96□□□□□ -0.5
PRDM9-201ENST00000296682 LTV1Q96GA3 475 aaPredicted RBP11.96□□□□□ -0.5
PRDM9-201ENST00000296682 EMILIN1Q9Y6C2 1016 aa11.96□□□□□ -0.5
PRDM9-201ENST00000296682 YTHDC2Q9H6S0 1430 aaKnown RBP11.95□□□□□ -0.5
PRDM9-201ENST00000296682 PRKAR2BP31323 418 aa11.95□□□□□ -0.5
PRDM9-201ENST00000296682 CCDC27Q2M243 656 aa11.95□□□□□ -0.5
PRDM9-201ENST00000296682 KDM2BQ8NHM5 1336 aa11.95□□□□□ -0.5
PRDM9-201ENST00000296682 IPO9Q96P70 1041 aaKnown RBP11.94□□□□□ -0.5
PRDM9-201ENST00000296682 MYH16Q9H6N6 1097 aa11.94□□□□□ -0.5
PRDM9-201ENST00000296682 FAM135BQ49AJ0 1406 aa11.94□□□□□ -0.5
PRDM9-201ENST00000296682 SIRT1Q96EB6 747 aa11.94□□□□□ -0.5
PRDM9-201ENST00000296682 ZMYM3Q14202 1370 aa11.94□□□□□ -0.5
PRDM9-201ENST00000296682 MARF1Q9Y4F3 1742 aaKnown RBP11.93□□□□□ -0.5
PRDM9-201ENST00000296682 HDGFP51858 240 aaKnown RBP11.93□□□□□ -0.5
PRDM9-201ENST00000296682 NGDNQ8NEJ9 315 aaKnown RBP11.93□□□□□ -0.5
PRDM9-201ENST00000296682 DCTN1Q14203 1278 aa11.93□□□□□ -0.5
PRDM9-201ENST00000296682 CPSF1Q10570 1443 aaKnown RBP11.93□□□□□ -0.5
PRDM9-201ENST00000296682 DIP2AQ14689 1571 aa11.93□□□□□ -0.5
PRDM9-201ENST00000296682 SPRYD3Q8NCJ5 442 aa11.92□□□□□ -0.5
PRDM9-201ENST00000296682 COG3Q96JB2 828 aa11.92□□□□□ -0.5
PRDM9-201ENST00000296682 SLIT1O75093 1534 aa11.92□□□□□ -0.5
PRDM9-201ENST00000296682 APBB1O00213 710 aa11.92□□□□□ -0.5
PRDM9-201ENST00000296682 NUDT16Q96DE0 195 aaKnown RBP11.92□□□□□ -0.5
PRDM9-201ENST00000296682 MAP2P11137 1827 aaKnown RBP11.91□□□□□ -0.5
PRDM9-201ENST00000296682 IGHDP01880 384 aa11.91□□□□□ -0.5
PRDM9-201ENST00000296682 A0A1W2PP64 1363 aa11.91□□□□□ -0.5
PRDM9-201ENST00000296682 TMPOP42166 694 aaKnown RBP11.91□□□□□ -0.5
PRDM9-201ENST00000296682 CENPQQ7L2Z9 268 aaPredicted RBP11.91□□□□□ -0.5
PRDM9-201ENST00000296682 EID1Q9Y6B2 187 aa11.91□□□□□ -0.5
PRDM9-201ENST00000296682 XRN1Q8IZH2 1706 aaKnown RBP11.9□□□□□ -0.5
PRDM9-201ENST00000296682 MS4A1P11836 297 aa11.9□□□□□ -0.5
PRDM9-201ENST00000296682 ARHGAP23Q9P227 1491 aa11.9□□□□□ -0.5
PRDM9-201ENST00000296682 PPIP5K1Q6PFW1 1433 aa11.9□□□□□ -0.51
PRDM9-201ENST00000296682 ATAD2Q6PL18 1390 aa11.89□□□□□ -0.51
PRDM9-201ENST00000296682 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.89□□□□□ -0.51
PRDM9-201ENST00000296682 RLBP1P12271 317 aa11.89□□□□□ -0.51
PRDM9-201ENST00000296682 RARSP54136 660 aaKnown RBP11.89□□□□□ -0.51
PRDM9-201ENST00000296682 DLG5Q8TDM6 1919 aa11.89□□□□□ -0.51
PRDM9-201ENST00000296682 BACH2Q9BYV9 841 aa11.89□□□□□ -0.51
PRDM9-201ENST00000296682 ZNF142P52746 1687 aaPredicted RBP11.88□□□□□ -0.51
PRDM9-201ENST00000296682 FAM83GA6ND36 823 aa11.88□□□□□ -0.51
PRDM9-201ENST00000296682 N4BP2Q86UW6 1770 aaPredicted RBP11.88□□□□□ -0.51
PRDM9-201ENST00000296682 NECTIN2Q92692 538 aa11.88□□□□□ -0.51
PRDM9-201ENST00000296682 FMN2Q9NZ56 1722 aa11.88□□□□□ -0.51
PRDM9-201ENST00000296682 ARXQ96QS3 562 aa11.88□□□□□ -0.51
PRDM9-201ENST00000296682 ZKSCAN2Q63HK3 967 aa11.87□□□□□ -0.51
PRDM9-201ENST00000296682 C1orf115Q9H7X2 142 aa11.87□□□□□ -0.51
PRDM9-201ENST00000296682 WASLO00401 505 aaPredicted RBP11.87□□□□□ -0.51
PRDM9-201ENST00000296682 PHACTR3Q96KR7 559 aa11.87□□□□□ -0.51
PRDM9-201ENST00000296682 MIS18AQ9NYP9 233 aa11.87□□□□□ -0.51
PRDM9-201ENST00000296682 NOB1Q9ULX3 412 aaKnown RBP11.87□□□□□ -0.51
PRDM9-201ENST00000296682 CCDC61Q9Y6R9 512 aa11.87□□□□□ -0.51
PRDM9-201ENST00000296682 DZIP1LQ8IYY4 767 aaKnown RBP11.86□□□□□ -0.51
PRDM9-201ENST00000296682 SSH1Q8WYL5 1049 aa11.86□□□□□ -0.51
PRDM9-201ENST00000296682 SULT6B1Q6IMI4 303 aa11.86□□□□□ -0.51
PRDM9-201ENST00000296682 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms