RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 PRDM2Q13029 1718 aa10.36□□□□□ -0.75
NIPBL-201ENST00000282516 BRPF1P55201 1214 aaPredicted RBP10.36□□□□□ -0.75
NIPBL-201ENST00000282516 SEPT11Q9NVA2 429 aaKnown RBP10.36□□□□□ -0.75
NIPBL-201ENST00000282516 COG6Q9Y2V7 657 aa10.36□□□□□ -0.75
NIPBL-201ENST00000282516 WASHC2CQ9Y4E1 1318 aa10.36□□□□□ -0.75
NIPBL-201ENST00000282516 SERPINC1P01008 464 aa10.35□□□□□ -0.75
NIPBL-201ENST00000282516 PPM1EQ8WY54 764 aa10.35□□□□□ -0.75
NIPBL-201ENST00000282516 SYTL4Q96C24 671 aaPredicted RBP10.34□□□□□ -0.75
NIPBL-201ENST00000282516 FSD1Q9BTV5 496 aa10.34□□□□□ -0.75
NIPBL-201ENST00000282516 FAM193AP78312 1265 aa10.34□□□□□ -0.75
NIPBL-201ENST00000282516 POTEJP0CG39 1038 aa10.34□□□□□ -0.75
NIPBL-201ENST00000282516 USP47Q96K76 1375 aa10.33□□□□□ -0.76
NIPBL-201ENST00000282516 RNF214Q8ND24 703 aa10.33□□□□□ -0.76
NIPBL-201ENST00000282516 DDX11Q96FC9 970 aa10.33□□□□□ -0.76
NIPBL-201ENST00000282516 GNL3LQ9NVN8 582 aaKnown RBP10.33□□□□□ -0.76
NIPBL-201ENST00000282516 TRIM22Q8IYM9 498 aa10.33□□□□□ -0.76
NIPBL-201ENST00000282516 ERC1Q8IUD2 1116 aa10.33□□□□□ -0.76
NIPBL-201ENST00000282516 MAP9Q49MG5 647 aa10.33□□□□□ -0.76
NIPBL-201ENST00000282516 NEUROD6Q96NK8 337 aa10.33□□□□□ -0.76
NIPBL-201ENST00000282516 FMNL2Q96PY5 1086 aa10.33□□□□□ -0.76
NIPBL-201ENST00000282516 TAF4BQ92750 862 aa10.32□□□□□ -0.76
NIPBL-201ENST00000282516 SHTN1A0MZ66 631 aa10.32□□□□□ -0.76
NIPBL-201ENST00000282516 ELL2O00472 640 aaPredicted RBP10.32□□□□□ -0.76
NIPBL-201ENST00000282516 UBTFL1P0CB47 393 aaPredicted RBP10.32□□□□□ -0.76
NIPBL-201ENST00000282516 DCAF8L1A6NGE4 600 aa10.32□□□□□ -0.76
NIPBL-201ENST00000282516 PLIN1O60240 522 aa10.32□□□□□ -0.76
NIPBL-201ENST00000282516 CETN2P41208 172 aa10.32□□□□□ -0.76
NIPBL-201ENST00000282516 EXOC6Q8TAG9 804 aa10.32□□□□□ -0.76
NIPBL-201ENST00000282516 TNMDQ9H2S6 317 aa10.32□□□□□ -0.76
NIPBL-201ENST00000282516 PANK3Q9H999 370 aa10.32□□□□□ -0.76
NIPBL-201ENST00000282516 RSPH4AQ5TD94 716 aa10.32□□□□□ -0.76
NIPBL-201ENST00000282516 LRRFIP2Q9Y608 721 aaKnown RBP10.32□□□□□ -0.76
NIPBL-201ENST00000282516 FAM107BQ9H098 131 aa10.32□□□□□ -0.76
NIPBL-201ENST00000282516 KIF2AO00139 706 aaPredicted RBP10.31□□□□□ -0.76
NIPBL-201ENST00000282516 GNAI1P63096 354 aa10.31□□□□□ -0.76
NIPBL-201ENST00000282516 CCDC102AQ96A19 550 aa10.31□□□□□ -0.76
NIPBL-201ENST00000282516 ANAPC15P60006 121 aa10.31□□□□□ -0.76
NIPBL-201ENST00000282516 MCM3P25205 808 aa10.31□□□□□ -0.76
NIPBL-201ENST00000282516 GRIPAP1Q4V328 841 aa10.31□□□□□ -0.76
NIPBL-201ENST00000282516 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.31□□□□□ -0.762e-6■■■□□ 19.2
NIPBL-201ENST00000282516 TANGO6Q9C0B7 1094 aa10.31□□□□□ -0.76
NIPBL-201ENST00000282516 ANKRD1Q15327 319 aa10.31□□□□□ -0.76
NIPBL-201ENST00000282516 AEBP1Q8IUX7 1158 aa10.31□□□□□ -0.76
NIPBL-201ENST00000282516 CFAP57Q96MR6 1250 aa10.31□□□□□ -0.76
NIPBL-201ENST00000282516 DIAPH1O60610 1272 aaKnown RBP10.3□□□□□ -0.76
NIPBL-201ENST00000282516 CCDC148Q8NFR7 591 aa10.3□□□□□ -0.76
NIPBL-201ENST00000282516 CDKL5O76039 1030 aa10.3□□□□□ -0.76
NIPBL-201ENST00000282516 PPP1R12BO60237 982 aaPredicted RBP10.3□□□□□ -0.76
NIPBL-201ENST00000282516 SPC24Q8NBT2 197 aa10.3□□□□□ -0.76
NIPBL-201ENST00000282516 GBP3Q9H0R5 595 aa10.3□□□□□ -0.76
NIPBL-201ENST00000282516 ANKRD18BA2A2Z9 1011 aa10.3□□□□□ -0.76
NIPBL-201ENST00000282516 FIBPO43427 364 aa10.3□□□□□ -0.76
NIPBL-201ENST00000282516 KIAA1328Q86T90 577 aa10.3□□□□□ -0.76
NIPBL-201ENST00000282516 CEP57L1Q8IYX8 460 aa10.3□□□□□ -0.76
NIPBL-201ENST00000282516 MTMR7Q9Y216 660 aa10.3□□□□□ -0.76
NIPBL-201ENST00000282516 KLHL34Q8N239 644 aa10.29□□□□□ -0.76
NIPBL-201ENST00000282516 MAP2K1Q02750 393 aaPredicted RBP10.29□□□□□ -0.76
NIPBL-201ENST00000282516 SMC1AQ14683 1233 aaKnown RBP10.29□□□□□ -0.76
NIPBL-201ENST00000282516 NECTIN2Q92692 538 aa10.29□□□□□ -0.76
NIPBL-201ENST00000282516 EPB41L2O43491 1005 aaKnown RBP10.29□□□□□ -0.76
NIPBL-201ENST00000282516 RIPK4P57078 832 aa10.29□□□□□ -0.76
NIPBL-201ENST00000282516 RIC3Q7Z5B4 369 aa10.29□□□□□ -0.76
NIPBL-201ENST00000282516 CRACR2AQ9BSW2 395 aa10.29□□□□□ -0.76
NIPBL-201ENST00000282516 TSPYL4Q9UJ04 414 aa10.29□□□□□ -0.76
NIPBL-201ENST00000282516 ATP2B1P20020 1258 aa10.29□□□□□ -0.76
NIPBL-201ENST00000282516 ME1P48163 572 aa10.29□□□□□ -0.76
NIPBL-201ENST00000282516 TMCO3Q6UWJ1 677 aa10.29□□□□□ -0.76
NIPBL-201ENST00000282516 BMP2KQ9NSY1 1161 aaPredicted RBP10.29□□□□□ -0.76
NIPBL-201ENST00000282516 NOL7Q9UMY1 257 aaKnown RBP10.29□□□□□ -0.76
NIPBL-201ENST00000282516 UQCRHLA0A096LP55 91 aa10.29□□□□□ -0.76
NIPBL-201ENST00000282516 UQCRHP07919 91 aa10.29□□□□□ -0.76
NIPBL-201ENST00000282516 PDCL2Q8N4E4 241 aa10.29□□□□□ -0.76
NIPBL-201ENST00000282516 RRP9O43818 475 aaKnown RBP10.28□□□□□ -0.76
NIPBL-201ENST00000282516 NACAP1Q9BZK3 213 aa10.28□□□□□ -0.76
NIPBL-201ENST00000282516 NFKBIBQ15653 356 aa10.28□□□□□ -0.76
NIPBL-201ENST00000282516 IMMTQ16891 758 aaKnown RBP10.28□□□□□ -0.76
NIPBL-201ENST00000282516 NUTM2DQ5VT03 806 aaPredicted RBP10.28□□□□□ -0.76
NIPBL-201ENST00000282516 RRBP1Q9P2E9 1410 aaKnown RBP10.28□□□□□ -0.76
NIPBL-201ENST00000282516 SMG6Q86US8 1419 aaKnown RBP10.28□□□□□ -0.76
NIPBL-201ENST00000282516 KIF6Q6ZMV9 814 aa10.28□□□□□ -0.76
NIPBL-201ENST00000282516 ZNF397Q8NF99 534 aaPredicted RBP10.28□□□□□ -0.76
NIPBL-201ENST00000282516 MATR3P43243 847 aaKnown RBP eCLIP10.28□□□□□ -0.764e-7■■■■□ 25.8
NIPBL-201ENST00000282516 ARHGAP29Q52LW3 1261 aa10.28□□□□□ -0.76
NIPBL-201ENST00000282516 TRAK2O60296 914 aa10.28□□□□□ -0.76
NIPBL-201ENST00000282516 MICALCLQ6ZW33 695 aa10.28□□□□□ -0.76
NIPBL-201ENST00000282516 SSR1P43307 286 aaKnown RBP10.28□□□□□ -0.76
NIPBL-201ENST00000282516 RUNDC1Q96C34 613 aa10.28□□□□□ -0.76
NIPBL-201ENST00000282516 CFAP45Q9UL16 551 aa10.28□□□□□ -0.76
NIPBL-201ENST00000282516 TRAK1Q9UPV9 953 aa10.28□□□□□ -0.76
NIPBL-201ENST00000282516 VPS36Q86VN1 386 aa10.27□□□□□ -0.76
NIPBL-201ENST00000282516 LNPKQ9C0E8 428 aa10.27□□□□□ -0.76
NIPBL-201ENST00000282516 NUTM2FA1L443 756 aa10.27□□□□□ -0.76
NIPBL-201ENST00000282516 CCDC57Q2TAC2 916 aa10.27□□□□□ -0.77
NIPBL-201ENST00000282516 ZHX3Q9H4I2 956 aa10.27□□□□□ -0.77
NIPBL-201ENST00000282516 VGFO15240 615 aaPredicted RBP10.27□□□□□ -0.77
NIPBL-201ENST00000282516 L3MBTL2Q969R5 705 aa10.27□□□□□ -0.77
NIPBL-201ENST00000282516 WDR33Q9C0J8 1336 aaKnown RBP10.27□□□□□ -0.77
NIPBL-201ENST00000282516 ERICH4A6NGS2 130 aa10.27□□□□□ -0.77
NIPBL-201ENST00000282516 GCOM1H8Y6P7 765 aaPredicted RBP10.27□□□□□ -0.77
NIPBL-201ENST00000282516 MYZAPP0CAP1 466 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms