RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 ZNF622Q969S3 477 aaKnown RBP eCLIP11.34□□□□□ -0.59
PDGFC-201ENST00000274071 EFCC1Q9HA90 598 aa11.34□□□□□ -0.59
PDGFC-201ENST00000274071 ARHGAP5Q13017 1502 aa11.34□□□□□ -0.59
PDGFC-201ENST00000274071 SSFA2P28290 1259 aa11.34□□□□□ -0.59
PDGFC-201ENST00000274071 PKD2Q13563 968 aa11.34□□□□□ -0.59
PDGFC-201ENST00000274071 UHRF1BP1LA0JNW5 1464 aa11.34□□□□□ -0.59
PDGFC-201ENST00000274071 CLEC17AQ6ZS10 378 aa11.34□□□□□ -0.59
PDGFC-201ENST00000274071 SNX21Q969T3 373 aa11.34□□□□□ -0.59
PDGFC-201ENST00000274071 CLUAP1Q96AJ1 413 aa11.34□□□□□ -0.59
PDGFC-201ENST00000274071 ZCCHC11Q5TAX3 1644 aaKnown RBP11.34□□□□□ -0.59
PDGFC-201ENST00000274071 ZMYM4Q5VZL5 1548 aa11.33□□□□□ -0.6
PDGFC-201ENST00000274071 CCDC141Q6ZP82 1450 aa11.33□□□□□ -0.6
PDGFC-201ENST00000274071 TEX14Q8IWB6 1497 aa11.33□□□□□ -0.6
PDGFC-201ENST00000274071 BCAR3O75815 825 aa11.33□□□□□ -0.6
PDGFC-201ENST00000274071 BAG4O95429 457 aaKnown RBP11.33□□□□□ -0.6
PDGFC-201ENST00000274071 NUP155O75694 1391 aa11.33□□□□□ -0.6
PDGFC-201ENST00000274071 ZMYM3Q14202 1370 aa11.33□□□□□ -0.6
PDGFC-201ENST00000274071 PTMAP06454 111 aaKnown RBP11.33□□□□□ -0.6
PDGFC-201ENST00000274071 ERICH4A6NGS2 130 aa11.32□□□□□ -0.6
PDGFC-201ENST00000274071 FOXD4L1Q9NU39 408 aa11.32□□□□□ -0.6
PDGFC-201ENST00000274071 CTNNA3Q9UI47 895 aa11.32□□□□□ -0.6
PDGFC-201ENST00000274071 INSRP06213 1382 aa11.32□□□□□ -0.6
PDGFC-201ENST00000274071 PLEKHH2Q8IVE3 1493 aa11.32□□□□□ -0.6
PDGFC-201ENST00000274071 KIAA1107Q9UPP5 1409 aa11.32□□□□□ -0.6
PDGFC-201ENST00000274071 FKBP5Q13451 457 aaPredicted RBP11.32□□□□□ -0.6
PDGFC-201ENST00000274071 C17orf53Q8N3J3 647 aaPredicted RBP11.32□□□□□ -0.6
PDGFC-201ENST00000274071 MYO5CQ9NQX4 1742 aa11.32□□□□□ -0.6
PDGFC-201ENST00000274071 EP400NLQ6ZTU2 488 aa11.31□□□□□ -0.6
PDGFC-201ENST00000274071 DDX41Q9UJV9 622 aaKnown RBP11.31□□□□□ -0.6
PDGFC-201ENST00000274071 PDZRN3Q9UPQ7 1066 aa11.31□□□□□ -0.6
PDGFC-201ENST00000274071 PARD3Q8TEW0 1356 aa11.31□□□□□ -0.6
PDGFC-201ENST00000274071 SYCP2Q9BX26 1530 aa11.31□□□□□ -0.6
PDGFC-201ENST00000274071 PATL2C9JE40 543 aaKnown RBP11.31□□□□□ -0.6
PDGFC-201ENST00000274071 CTIFO43310 598 aaKnown RBP11.31□□□□□ -0.6
PDGFC-201ENST00000274071 RIOK3O14730 519 aaKnown RBP11.31□□□□□ -0.6
PDGFC-201ENST00000274071 TNNT3P45378 269 aaPredicted RBP11.31□□□□□ -0.6
PDGFC-201ENST00000274071 CNKSR2Q8WXI2 1034 aa11.31□□□□□ -0.6
PDGFC-201ENST00000274071 CCDC144AA2RUR9 1427 aa11.3□□□□□ -0.6
PDGFC-201ENST00000274071 CGNL1Q0VF96 1302 aa11.3□□□□□ -0.6
PDGFC-201ENST00000274071 PLEKHH1Q9ULM0 1364 aa11.3□□□□□ -0.6
PDGFC-201ENST00000274071 MPNDQ8N594 471 aa11.3□□□□□ -0.6
PDGFC-201ENST00000274071 SIRT1Q96EB6 747 aa11.3□□□□□ -0.6
PDGFC-201ENST00000274071 MORC2Q9Y6X9 1032 aaPredicted RBP11.3□□□□□ -0.6
PDGFC-201ENST00000274071 GOLGA2Q08379 1002 aa11.3□□□□□ -0.6
PDGFC-201ENST00000274071 CC2D1BQ5T0F9 858 aaKnown RBP11.29□□□□□ -0.6
PDGFC-201ENST00000274071 SPTLC3Q9NUV7 552 aa11.29□□□□□ -0.6
PDGFC-201ENST00000274071 PLCH2O75038 1416 aa11.29□□□□□ -0.6
PDGFC-201ENST00000274071 NOP2P46087 812 aaKnown RBP11.29□□□□□ -0.6
PDGFC-201ENST00000274071 EFCAB2Q5VUJ9 269 aa11.29□□□□□ -0.6
PDGFC-201ENST00000274071 LMBRD1Q9NUN5 540 aa11.29□□□□□ -0.6
PDGFC-201ENST00000274071 COG6Q9Y2V7 657 aa11.29□□□□□ -0.6
PDGFC-201ENST00000274071 MCTP1Q6DN14 999 aa11.28□□□□□ -0.6
PDGFC-201ENST00000274071 LRSAM1Q6UWE0 723 aa11.28□□□□□ -0.6
PDGFC-201ENST00000274071 RSPH14Q9UHP6 348 aa11.28□□□□□ -0.6
PDGFC-201ENST00000274071 ARHGAP31Q2M1Z3 1444 aa11.28□□□□□ -0.6
PDGFC-201ENST00000274071 RNF214Q8ND24 703 aa11.28□□□□□ -0.6
PDGFC-201ENST00000274071 RBM27Q9P2N5 1060 aaKnown RBP11.28□□□□□ -0.6
PDGFC-201ENST00000274071 ADAMTS8Q9UP79 889 aa11.28□□□□□ -0.6
PDGFC-201ENST00000274071 ZNF521Q96K83 1311 aa11.28□□□□□ -0.6
PDGFC-201ENST00000274071 SLFN5Q08AF3 891 aa11.28□□□□□ -0.6
PDGFC-201ENST00000274071 CARD10Q9BWT7 1032 aa11.28□□□□□ -0.6
PDGFC-201ENST00000274071 HNRNPH2P55795 449 aaKnown RBP11.27□□□□□ -0.61
PDGFC-201ENST00000274071 NCBP1Q09161 790 aaKnown RBP11.27□□□□□ -0.61
PDGFC-201ENST00000274071 HOMEZQ8IX15 550 aa11.27□□□□□ -0.61
PDGFC-201ENST00000274071 PANK1Q8TE04 598 aa11.27□□□□□ -0.61
PDGFC-201ENST00000274071 DIAPH3Q9NSV4 1193 aa11.27□□□□□ -0.61
PDGFC-201ENST00000274071 PDE3AQ14432 1141 aa11.27□□□□□ -0.61
PDGFC-201ENST00000274071 OSCARQ8IYS5 282 aa11.27□□□□□ -0.61
PDGFC-201ENST00000274071 PCDHB15Q9Y5E8 787 aa11.27□□□□□ -0.61
PDGFC-201ENST00000274071 SYCE3A1L190 88 aa11.26□□□□□ -0.61
PDGFC-201ENST00000274071 CD2BP2O95400 341 aaKnown RBP11.26□□□□□ -0.61
PDGFC-201ENST00000274071 RAD51AP2Q09MP3 1159 aa11.26□□□□□ -0.61
PDGFC-201ENST00000274071 LMOD3Q0VAK6 560 aa11.26□□□□□ -0.61
PDGFC-201ENST00000274071 PMFBP1Q8TBY8 1022 aa11.26□□□□□ -0.61
PDGFC-201ENST00000274071 TTC12Q9H892 705 aaPredicted RBP11.26□□□□□ -0.61
PDGFC-201ENST00000274071 GTF2A1P52655 376 aaPredicted RBP11.26□□□□□ -0.61
PDGFC-201ENST00000274071 KDM5DQ9BY66 1539 aa11.26□□□□□ -0.61
PDGFC-201ENST00000274071 ARHGEF12Q9NZN5 1544 aa11.26□□□□□ -0.61
PDGFC-201ENST00000274071 NPC1L1Q9UHC9 1359 aa11.25□□□□□ -0.61
PDGFC-201ENST00000274071 DHX16O60231 1041 aaKnown RBP11.25□□□□□ -0.61
PDGFC-201ENST00000274071 HSP90B1P14625 803 aaKnown RBP11.25□□□□□ -0.61
PDGFC-201ENST00000274071 GPT2Q8TD30 523 aa11.25□□□□□ -0.61
PDGFC-201ENST00000274071 TMX1Q9H3N1 280 aa11.25□□□□□ -0.61
PDGFC-201ENST00000274071 SPINK5Q9NQ38 1064 aaPredicted RBP11.25□□□□□ -0.61
PDGFC-201ENST00000274071 MAST1Q9Y2H9 1570 aa11.25□□□□□ -0.61
PDGFC-201ENST00000274071 TMED8Q6PL24 325 aaPredicted RBP11.25□□□□□ -0.61
PDGFC-201ENST00000274071 TRMT2AQ8IZ69 625 aaKnown RBP11.25□□□□□ -0.61
PDGFC-201ENST00000274071 BANK1Q8NDB2 785 aa11.25□□□□□ -0.61
PDGFC-201ENST00000274071 CT47A1Q5JQC4 288 aaPredicted RBP11.25□□□□□ -0.61
PDGFC-201ENST00000274071 KIF18AQ8NI77 898 aa11.25□□□□□ -0.61
PDGFC-201ENST00000274071 TMEM63CQ9P1W3 806 aa11.25□□□□□ -0.61
PDGFC-201ENST00000274071 KRT222Q8N1A0 295 aa11.24□□□□□ -0.61
PDGFC-201ENST00000274071 PER1O15534 1290 aaPredicted RBP11.24□□□□□ -0.61
PDGFC-201ENST00000274071 BRPF1P55201 1214 aaPredicted RBP11.24□□□□□ -0.61
PDGFC-201ENST00000274071 CHAF1AQ13111 956 aaPredicted RBP11.24□□□□□ -0.61
PDGFC-201ENST00000274071 GAS2L2Q8NHY3 880 aa11.24□□□□□ -0.61
PDGFC-201ENST00000274071 MYCBPQ99417 103 aaPredicted RBP11.24□□□□□ -0.61
PDGFC-201ENST00000274071 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.24□□□□□ -0.61
PDGFC-201ENST00000274071 KDM5CP41229 1560 aa11.23□□□□□ -0.61
PDGFC-201ENST00000274071 NCAPGQ9BPX3 1015 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms