RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 ANKRD1Q15327 319 aa9.52□□□□□ -0.89
LIMD1-201ENST00000273317 ZNHIT6Q9NWK9 470 aaKnown RBP9.52□□□□□ -0.89
LIMD1-201ENST00000273317 KIAA0754O94854 1291 aa9.52□□□□□ -0.89
LIMD1-201ENST00000273317 ANKRD18AQ8IVF6 992 aa9.52□□□□□ -0.89
LIMD1-201ENST00000273317 EVA1CP58658 441 aa9.52□□□□□ -0.89
LIMD1-201ENST00000273317 STIM1Q13586 685 aa9.52□□□□□ -0.89
LIMD1-201ENST00000273317 TSPYL4Q9UJ04 414 aa9.52□□□□□ -0.89
LIMD1-201ENST00000273317 CCDC192P0DO97 292 aa9.51□□□□□ -0.89
LIMD1-201ENST00000273317 EIF3JO75822 258 aaKnown RBP9.51□□□□□ -0.89
LIMD1-201ENST00000273317 CBFA2T2O43439 604 aa9.51□□□□□ -0.89
LIMD1-201ENST00000273317 ATAD2BQ9ULI0 1458 aa9.51□□□□□ -0.89
LIMD1-201ENST00000273317 EIF2S2P20042 333 aaKnown RBP9.51□□□□□ -0.89
LIMD1-201ENST00000273317 FOSBP53539 338 aa9.51□□□□□ -0.89
LIMD1-201ENST00000273317 TBC1D2BQ9UPU7 963 aa9.51□□□□□ -0.89
LIMD1-201ENST00000273317 R3HCC1Q9Y3T6 440 aaKnown RBP9.51□□□□□ -0.89
LIMD1-201ENST00000273317 SKIDA1Q1XH10 827 aa9.51□□□□□ -0.89
LIMD1-201ENST00000273317 INCENPQ9NQS7 918 aa9.51□□□□□ -0.89
LIMD1-201ENST00000273317 MINK1Q8N4C8 1332 aaPredicted RBP9.5□□□□□ -0.89
LIMD1-201ENST00000273317 TRAK2O60296 914 aa9.5□□□□□ -0.89
LIMD1-201ENST00000273317 USP8P40818 1118 aa9.5□□□□□ -0.89
LIMD1-201ENST00000273317 CNKSR2Q8WXI2 1034 aa9.5□□□□□ -0.89
LIMD1-201ENST00000273317 CDK5RAP3Q96JB5 506 aa9.5□□□□□ -0.89
LIMD1-201ENST00000273317 NUTM2DQ5VT03 806 aaPredicted RBP9.5□□□□□ -0.89
LIMD1-201ENST00000273317 GCC1Q96CN9 775 aa9.5□□□□□ -0.89
LIMD1-201ENST00000273317 POLA1P09884 1462 aaPredicted RBP9.5□□□□□ -0.89
LIMD1-201ENST00000273317 FGD5Q6ZNL6 1462 aa9.5□□□□□ -0.89
LIMD1-201ENST00000273317 NCOA2Q15596 1464 aa9.5□□□□□ -0.89
LIMD1-201ENST00000273317 FSD1Q9BTV5 496 aa9.5□□□□□ -0.89
LIMD1-201ENST00000273317 CIZ1Q9ULV3 898 aaPredicted RBP9.49□□□□□ -0.89
LIMD1-201ENST00000273317 IBSPP21815 317 aaPredicted RBP9.49□□□□□ -0.89
LIMD1-201ENST00000273317 RBM33Q96EV2 1170 aaKnown RBP9.49□□□□□ -0.89
LIMD1-201ENST00000273317 HFM1A2PYH4 1435 aa9.49□□□□□ -0.89
LIMD1-201ENST00000273317 RAD21O60216 631 aa9.49□□□□□ -0.89
LIMD1-201ENST00000273317 LNPKQ9C0E8 428 aa9.49□□□□□ -0.89
LIMD1-201ENST00000273317 WDR33Q9C0J8 1336 aaKnown RBP9.49□□□□□ -0.89
LIMD1-201ENST00000273317 ELL2O00472 640 aaPredicted RBP9.49□□□□□ -0.89
LIMD1-201ENST00000273317 PDE3AQ14432 1141 aa9.49□□□□□ -0.89
LIMD1-201ENST00000273317 AXDND1Q5T1B0 1012 aaPredicted RBP9.49□□□□□ -0.89
LIMD1-201ENST00000273317 KIF2AO00139 706 aaPredicted RBP9.48□□□□□ -0.89
LIMD1-201ENST00000273317 TSPYL1Q9H0U9 437 aa9.48□□□□□ -0.89
LIMD1-201ENST00000273317 CCDC30Q5VVM6 783 aa9.48□□□□□ -0.89
LIMD1-201ENST00000273317 ANKRD50Q9ULJ7 1429 aa9.48□□□□□ -0.89
LIMD1-201ENST00000273317 HSP90AB3PQ58FF7 597 aa9.48□□□□□ -0.89
LIMD1-201ENST00000273317 PPFIBP1Q86W92 1011 aa9.48□□□□□ -0.89
LIMD1-201ENST00000273317 STK38Q15208 465 aa9.47□□□□□ -0.89
LIMD1-201ENST00000273317 SYCP1Q15431 976 aa9.47□□□□□ -0.89
LIMD1-201ENST00000273317 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.47□□□□□ -0.896e-7■■□□□ 12
LIMD1-201ENST00000273317 SRCIN1Q9C0H9 1055 aa9.47□□□□□ -0.89
LIMD1-201ENST00000273317 PANK1Q8TE04 598 aa9.47□□□□□ -0.89
LIMD1-201ENST00000273317 CDKL5O76039 1030 aa9.47□□□□□ -0.89
LIMD1-201ENST00000273317 EZRP15311 586 aaKnown RBP9.47□□□□□ -0.89
LIMD1-201ENST00000273317 GAS2L2Q8NHY3 880 aa9.47□□□□□ -0.89
LIMD1-201ENST00000273317 GNL3LQ9NVN8 582 aaKnown RBP9.47□□□□□ -0.89
LIMD1-201ENST00000273317 CCAR1Q8IX12 1150 aaKnown RBP9.47□□□□□ -0.89
LIMD1-201ENST00000273317 WASHC4Q2M389 1173 aa9.47□□□□□ -0.89
LIMD1-201ENST00000273317 CCDC112Q8NEF3 446 aa9.47□□□□□ -0.89
LIMD1-201ENST00000273317 RRP9O43818 475 aaKnown RBP9.47□□□□□ -0.89
LIMD1-201ENST00000273317 PSME1Q06323 249 aa9.47□□□□□ -0.89
LIMD1-201ENST00000273317 RBM10P98175 930 aaKnown RBP9.46□□□□□ -0.89
LIMD1-201ENST00000273317 RIC3Q7Z5B4 369 aa9.46□□□□□ -0.89
LIMD1-201ENST00000273317 CLASRPQ8N2M8 674 aaKnown RBP9.46□□□□□ -0.89
LIMD1-201ENST00000273317 TNMDQ9H2S6 317 aa9.46□□□□□ -0.89
LIMD1-201ENST00000273317 CCT4P50991 539 aaKnown RBP9.46□□□□□ -0.89
LIMD1-201ENST00000273317 TIAM1Q13009 1591 aa9.46□□□□□ -0.9
LIMD1-201ENST00000273317 PLEKHH1Q9ULM0 1364 aa9.46□□□□□ -0.9
LIMD1-201ENST00000273317 KRI1Q8N9T8 703 aaKnown RBP9.45□□□□□ -0.9
LIMD1-201ENST00000273317 TRIM22Q8IYM9 498 aa9.45□□□□□ -0.9
LIMD1-201ENST00000273317 PDCL2Q8N4E4 241 aa9.45□□□□□ -0.9
LIMD1-201ENST00000273317 CYP46A1Q9Y6A2 500 aa9.45□□□□□ -0.9
LIMD1-201ENST00000273317 JPH4Q96JJ6 628 aa9.45□□□□□ -0.9
LIMD1-201ENST00000273317 KIF6Q6ZMV9 814 aa9.45□□□□□ -0.9
LIMD1-201ENST00000273317 GNAI2P04899 355 aa9.45□□□□□ -0.9
LIMD1-201ENST00000273317 ZFYVE27Q5T4F4 411 aa9.45□□□□□ -0.9
LIMD1-201ENST00000273317 WWC2Q6AWC2 1192 aa9.44□□□□□ -0.9
LIMD1-201ENST00000273317 RAPGEF4Q8WZA2 1011 aa9.44□□□□□ -0.9
LIMD1-201ENST00000273317 KRT85P78386 507 aa9.44□□□□□ -0.9
LIMD1-201ENST00000273317 NEUROD6Q96NK8 337 aa9.44□□□□□ -0.9
LIMD1-201ENST00000273317 SYNJ2O15056 1496 aa9.44□□□□□ -0.9
LIMD1-201ENST00000273317 SEPT7Q16181 437 aaKnown RBP9.44□□□□□ -0.9
LIMD1-201ENST00000273317 DAPK1P53355 1430 aa9.44□□□□□ -0.9
LIMD1-201ENST00000273317 CEP57L1Q8IYX8 460 aa9.44□□□□□ -0.9
LIMD1-201ENST00000273317 GPRASP1Q5JY77 1395 aa9.44□□□□□ -0.9
LIMD1-201ENST00000273317 ZSCAN31Q96LW9 406 aaPredicted RBP9.44□□□□□ -0.9
LIMD1-201ENST00000273317 KRT18P05783 430 aaKnown RBP9.43□□□□□ -0.9
LIMD1-201ENST00000273317 NEK4P51957 841 aa9.43□□□□□ -0.9
LIMD1-201ENST00000273317 TOP2BQ02880 1626 aa9.43□□□□□ -0.9
LIMD1-201ENST00000273317 GBP2P32456 591 aaPredicted RBP9.43□□□□□ -0.9
LIMD1-201ENST00000273317 K7ELQ4 463 aaPredicted RBP9.43□□□□□ -0.9
LIMD1-201ENST00000273317 CUL7Q14999 1698 aa9.43□□□□□ -0.9
LIMD1-201ENST00000273317 SERPINC1P01008 464 aa9.43□□□□□ -0.9
LIMD1-201ENST00000273317 NACAP1Q9BZK3 213 aa9.43□□□□□ -0.9
LIMD1-201ENST00000273317 CCDC141Q6ZP82 1450 aa9.43□□□□□ -0.9
LIMD1-201ENST00000273317 MCM3P25205 808 aa9.43□□□□□ -0.9
LIMD1-201ENST00000273317 CCDC181Q5TID7 509 aa9.43□□□□□ -0.9
LIMD1-201ENST00000273317 RNF214Q8ND24 703 aa9.43□□□□□ -0.9
LIMD1-201ENST00000273317 FIBPO43427 364 aa9.42□□□□□ -0.9
LIMD1-201ENST00000273317 WASF1Q92558 559 aa9.42□□□□□ -0.9
LIMD1-201ENST00000273317 CFAP45Q9UL16 551 aa9.42□□□□□ -0.9
LIMD1-201ENST00000273317 C9orf84Q5VXU9 1444 aa9.42□□□□□ -0.9
LIMD1-201ENST00000273317 TTLL5Q6EMB2 1281 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms