RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 GBP4Q96PP9 640 aa9.61□□□□□ -0.87
USP3-201ENST00000268049 ZFYVE16Q7Z3T8 1539 aa9.61□□□□□ -0.87
USP3-201ENST00000268049 SETQ01105 290 aaPredicted RBP9.61□□□□□ -0.87
USP3-201ENST00000268049 SYNE3Q6ZMZ3 975 aa9.61□□□□□ -0.87
USP3-201ENST00000268049 CFAP74Q9C0B2 1584 aa9.61□□□□□ -0.87
USP3-201ENST00000268049 DHX16O60231 1041 aaKnown RBP9.61□□□□□ -0.87
USP3-201ENST00000268049 RASSF8Q8NHQ8 419 aa9.6□□□□□ -0.87
USP3-201ENST00000268049 TSPOAP1O95153 1857 aa9.6□□□□□ -0.87
USP3-201ENST00000268049 NCKAP5LQ9HCH0 1330 aa9.6□□□□□ -0.87
USP3-201ENST00000268049 A0A087WZG4 1122 aa9.6□□□□□ -0.87
USP3-201ENST00000268049 RBM5P52756 815 aaKnown RBP eCLIP9.6□□□□□ -0.87
USP3-201ENST00000268049 WAPLQ7Z5K2 1190 aa9.59□□□□□ -0.87
USP3-201ENST00000268049 AIDAQ96BJ3 306 aa9.59□□□□□ -0.87
USP3-201ENST00000268049 HTATSF1O43719 755 aaKnown RBP9.59□□□□□ -0.87
USP3-201ENST00000268049 GPR162Q16538 588 aa9.59□□□□□ -0.87
USP3-201ENST00000268049 CABP1Q9NZU7 370 aa9.59□□□□□ -0.87
USP3-201ENST00000268049 C9orf78Q9NZ63 289 aaPredicted RBP9.59□□□□□ -0.87
USP3-201ENST00000268049 ATP7AQ04656 1500 aa9.59□□□□□ -0.87
USP3-201ENST00000268049 RIMBP3CA6NJZ7 1639 aa9.58□□□□□ -0.88
USP3-201ENST00000268049 RIMBP3BA6NNM3 1639 aa9.58□□□□□ -0.88
USP3-201ENST00000268049 ZCCHC11Q5TAX3 1644 aaKnown RBP9.58□□□□□ -0.88
USP3-201ENST00000268049 RIMBP3Q9UFD9 1639 aa9.58□□□□□ -0.88
USP3-201ENST00000268049 STARD3NLO95772 234 aa9.58□□□□□ -0.88
USP3-201ENST00000268049 XPCQ01831 940 aaPredicted RBP9.58□□□□□ -0.88
USP3-201ENST00000268049 SPRYD3Q8NCJ5 442 aa9.58□□□□□ -0.88
USP3-201ENST00000268049 CLASP1Q7Z460 1538 aa9.58□□□□□ -0.88
USP3-201ENST00000268049 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.58□□□□□ -0.88
USP3-201ENST00000268049 GAS2L2Q8NHY3 880 aa9.58□□□□□ -0.88
USP3-201ENST00000268049 GGNBP2Q9H3C7 697 aa9.58□□□□□ -0.88
USP3-201ENST00000268049 NPHP3Q7Z494 1330 aa9.58□□□□□ -0.88
USP3-201ENST00000268049 GOLGA6L1Q8N7Z2 621 aa9.58□□□□□ -0.88
USP3-201ENST00000268049 GOLGA6L4A6NEF3 574 aa9.58□□□□□ -0.88
USP3-201ENST00000268049 SPDYE4A6NLX3 237 aa9.58□□□□□ -0.88
USP3-201ENST00000268049 CCDC61Q9Y6R9 512 aa9.58□□□□□ -0.88
USP3-201ENST00000268049 IKQ13123 557 aaPredicted RBP9.58□□□□□ -0.88
USP3-201ENST00000268049 ADGRF5Q8IZF2 1346 aa9.57□□□□□ -0.88
USP3-201ENST00000268049 ARHGEF6Q15052 776 aa9.57□□□□□ -0.88
USP3-201ENST00000268049 IL27Q8NEV9 243 aa9.57□□□□□ -0.88
USP3-201ENST00000268049 PNISRQ8TF01 805 aaKnown RBP9.57□□□□□ -0.88
USP3-201ENST00000268049 TCERG1O14776 1098 aaKnown RBP9.57□□□□□ -0.88
USP3-201ENST00000268049 SLC3A2P08195 630 aaKnown RBP9.57□□□□□ -0.88
USP3-201ENST00000268049 NUDT16Q96DE0 195 aaKnown RBP9.57□□□□□ -0.88
USP3-201ENST00000268049 MAPKBP1O60336 1514 aa9.57□□□□□ -0.88
USP3-201ENST00000268049 FANCIQ9NVI1 1328 aa9.57□□□□□ -0.88
USP3-201ENST00000268049 SAMD1Q6SPF0 538 aaPredicted RBP9.57□□□□□ -0.88
USP3-201ENST00000268049 SMARCC1Q92922 1105 aaPredicted RBP9.57□□□□□ -0.88
USP3-201ENST00000268049 SLKQ9H2G2 1235 aaPredicted RBP9.57□□□□□ -0.88
USP3-201ENST00000268049 NOS1P29475 1434 aa9.57□□□□□ -0.88
USP3-201ENST00000268049 SLC4A10Q6U841 1118 aa9.57□□□□□ -0.88
USP3-201ENST00000268049 KIF3AQ9Y496 699 aa9.57□□□□□ -0.88
USP3-201ENST00000268049 SHANK2Q9UPX8 1470 aa9.56□□□□□ -0.88
USP3-201ENST00000268049 RIC3Q7Z5B4 369 aa9.56□□□□□ -0.88
USP3-201ENST00000268049 TMOD3Q9NYL9 352 aa9.56□□□□□ -0.88
USP3-201ENST00000268049 DIAPH1O60610 1272 aaKnown RBP9.56□□□□□ -0.88
USP3-201ENST00000268049 YEATS2Q9ULM3 1422 aa9.56□□□□□ -0.88
USP3-201ENST00000268049 RIMS2Q9UQ26 1411 aa9.56□□□□□ -0.88
USP3-201ENST00000268049 EIF2S2P20042 333 aaKnown RBP9.56□□□□□ -0.88
USP3-201ENST00000268049 ST5P78524 1137 aa9.56□□□□□ -0.88
USP3-201ENST00000268049 CEP89Q96ST8 783 aa9.56□□□□□ -0.88
USP3-201ENST00000268049 FAM13BQ9NYF5 915 aa9.56□□□□□ -0.88
USP3-201ENST00000268049 CFAP43Q8NDM7 1665 aa9.56□□□□□ -0.88
USP3-201ENST00000268049 TCOF1Q13428 1488 aaKnown RBP9.56□□□□□ -0.88
USP3-201ENST00000268049 ATAD2Q6PL18 1390 aa9.55□□□□□ -0.88
USP3-201ENST00000268049 RPGRQ92834 1020 aaKnown RBP9.55□□□□□ -0.88
USP3-201ENST00000268049 BCL2L13Q9BXK5 485 aa9.55□□□□□ -0.88
USP3-201ENST00000268049 PHF8Q9UPP1 1060 aa9.55□□□□□ -0.88
USP3-201ENST00000268049 MAGI2Q86UL8 1455 aa9.55□□□□□ -0.88
USP3-201ENST00000268049 FOXO3O43524 673 aa9.55□□□□□ -0.88
USP3-201ENST00000268049 GRM1Q13255 1194 aa9.55□□□□□ -0.88
USP3-201ENST00000268049 SLC12A5Q9H2X9 1139 aa9.54□□□□□ -0.88
USP3-201ENST00000268049 RXRBP28702 533 aa9.54□□□□□ -0.88
USP3-201ENST00000268049 MYO1BO43795 1136 aa9.54□□□□□ -0.88
USP3-201ENST00000268049 CDCA7Q9BWT1 371 aaPredicted RBP9.54□□□□□ -0.88
USP3-201ENST00000268049 KDM6BO15054 1643 aa9.54□□□□□ -0.88
USP3-201ENST00000268049 MYO5CQ9NQX4 1742 aa9.54□□□□□ -0.88
USP3-201ENST00000268049 MPHOSPH10O00566 681 aaKnown RBP9.54□□□□□ -0.88
USP3-201ENST00000268049 C14orf93Q9H972 538 aaKnown RBP9.53□□□□□ -0.88
USP3-201ENST00000268049 PARP3Q9Y6F1 533 aa9.53□□□□□ -0.88
USP3-201ENST00000268049 ERICH2A1L162 156 aa9.53□□□□□ -0.88
USP3-201ENST00000268049 CCER2I3L3R5 266 aa9.53□□□□□ -0.88
USP3-201ENST00000268049 CPLX2Q6PUV4 134 aaKnown RBP9.53□□□□□ -0.88
USP3-201ENST00000268049 TMEM132AQ24JP5 1023 aa9.53□□□□□ -0.88
USP3-201ENST00000268049 FAM177BA6PVY3 158 aa9.53□□□□□ -0.88
USP3-201ENST00000268049 RFC4P35249 363 aa9.53□□□□□ -0.88
USP3-201ENST00000268049 CCDC27Q2M243 656 aa9.53□□□□□ -0.88
USP3-201ENST00000268049 MAP7D2Q96T17 732 aa9.53□□□□□ -0.88
USP3-201ENST00000268049 PTPRKQ15262 1439 aa9.53□□□□□ -0.88
USP3-201ENST00000268049 MPHOSPH6Q99547 160 aaKnown RBP9.52□□□□□ -0.88
USP3-201ENST00000268049 MYBBP1AQ9BQG0 1328 aaKnown RBP9.52□□□□□ -0.88
USP3-201ENST00000268049 WASLO00401 505 aaPredicted RBP9.52□□□□□ -0.89
USP3-201ENST00000268049 CCDC146Q8IYE0 955 aa9.52□□□□□ -0.89
USP3-201ENST00000268049 MAGI3Q5TCQ9 1506 aa9.52□□□□□ -0.89
USP3-201ENST00000268049 TBC1D2BQ9UPU7 963 aa9.52□□□□□ -0.89
USP3-201ENST00000268049 ZC3H6P61129 1189 aaKnown RBP9.52□□□□□ -0.89
USP3-201ENST00000268049 KRT28Q7Z3Y7 464 aa9.52□□□□□ -0.89
USP3-201ENST00000268049 JDP2Q8WYK2 163 aa9.52□□□□□ -0.89
USP3-201ENST00000268049 SYAP1Q96A49 352 aaPredicted RBP9.52□□□□□ -0.89
USP3-201ENST00000268049 HDAC9Q9UKV0 1011 aa9.51□□□□□ -0.89
USP3-201ENST00000268049 C19orf44Q9H6X5 657 aa9.51□□□□□ -0.89
USP3-201ENST00000268049 CRBNQ96SW2 442 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms