RNA–Protein interactions for RNA: ENST00000263351.9

ZNF541-201, Transcript of zinc finger protein 541, humanhuman

TSL 1 (best)

Gene ZNF541, Length 2,573 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541-201ENST00000263351 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.96■□□□□ 0.95
ZNF541-201ENST00000263351 FOXD4L1Q9NU39 408 aa20.96■□□□□ 0.95
ZNF541-201ENST00000263351 ATF7IPQ6VMQ6 1270 aa20.96■□□□□ 0.95
ZNF541-201ENST00000263351 NEURL4Q96JN8 1562 aa20.96■□□□□ 0.95
ZNF541-201ENST00000263351 PRAM1Q96QH2 718 aa20.95■□□□□ 0.95
ZNF541-201ENST00000263351 HMOX1P09601 288 aa20.94■□□□□ 0.94
ZNF541-201ENST00000263351 ARHGEF28Q8N1W1 1705 aaKnown RBP20.94■□□□□ 0.94
ZNF541-201ENST00000263351 TSPYL6Q8N831 410 aa20.92■□□□□ 0.94
ZNF541-201ENST00000263351 ADGRB2O60241 1585 aa20.91■□□□□ 0.94
ZNF541-201ENST00000263351 XRCC6P12956 609 aaKnown RBP eCLIP20.91■□□□□ 0.94
ZNF541-201ENST00000263351 MCM4P33991 863 aa20.91■□□□□ 0.94
ZNF541-201ENST00000263351 PHACTR3Q96KR7 559 aa20.91■□□□□ 0.94
ZNF541-201ENST00000263351 LMTK2Q8IWU2 1503 aa20.91■□□□□ 0.94
ZNF541-201ENST00000263351 ABCC3O15438 1527 aa20.9■□□□□ 0.94
ZNF541-201ENST00000263351 FBXO31Q5XUX0 539 aaPredicted RBP20.9■□□□□ 0.94
ZNF541-201ENST00000263351 ZBTB40Q9NUA8 1239 aa20.9■□□□□ 0.94
ZNF541-201ENST00000263351 CABP1Q9NZU7 370 aa20.9■□□□□ 0.94
ZNF541-201ENST00000263351 CD2BP2O95400 341 aaKnown RBP20.9■□□□□ 0.94
ZNF541-201ENST00000263351 VGFO15240 615 aaPredicted RBP20.89■□□□□ 0.93
ZNF541-201ENST00000263351 COL3A1P02461 1466 aaPredicted RBP20.89■□□□□ 0.93
ZNF541-201ENST00000263351 ABCC11Q96J66 1382 aa20.89■□□□□ 0.93
ZNF541-201ENST00000263351 PRKAR2BP31323 418 aa20.89■□□□□ 0.93
ZNF541-201ENST00000263351 RBM42Q9BTD8 480 aaKnown RBP20.89■□□□□ 0.93
ZNF541-201ENST00000263351 ZRANB1Q9UGI0 708 aa20.89■□□□□ 0.93
ZNF541-201ENST00000263351 DDX19BQ9UMR2 479 aa20.89■□□□□ 0.93
ZNF541-201ENST00000263351 ATAD2Q6PL18 1390 aa20.88■□□□□ 0.93
ZNF541-201ENST00000263351 NEXMIFQ5QGS0 1516 aa20.88■□□□□ 0.93
ZNF541-201ENST00000263351 POGZQ7Z3K3 1410 aa20.88■□□□□ 0.93
ZNF541-201ENST00000263351 HDAC1Q13547 482 aaPredicted RBP20.87■□□□□ 0.93
ZNF541-201ENST00000263351 SMC5Q8IY18 1101 aa20.87■□□□□ 0.93
ZNF541-201ENST00000263351 DIAPH1O60610 1272 aaKnown RBP20.87■□□□□ 0.93
ZNF541-201ENST00000263351 USP32Q8NFA0 1604 aa20.86■□□□□ 0.93
ZNF541-201ENST00000263351 WAPLQ7Z5K2 1190 aa20.86■□□□□ 0.93
ZNF541-201ENST00000263351 CD163L1Q9NR16 1453 aa20.86■□□□□ 0.93
ZNF541-201ENST00000263351 MYO5BQ9ULV0 1848 aa20.85■□□□□ 0.93
ZNF541-201ENST00000263351 ZNF692Q9BU19 519 aaPredicted RBP20.85■□□□□ 0.93
ZNF541-201ENST00000263351 NCKAP5LQ9HCH0 1330 aa20.85■□□□□ 0.93
ZNF541-201ENST00000263351 HECW2Q9P2P5 1572 aa20.84■□□□□ 0.93
ZNF541-201ENST00000263351 FAM43AQ8N2R8 423 aa20.84■□□□□ 0.93
ZNF541-201ENST00000263351 CDK19Q9BWU1 502 aa20.84■□□□□ 0.93
ZNF541-201ENST00000263351 TRAK2O60296 914 aa20.84■□□□□ 0.93
ZNF541-201ENST00000263351 ANKRD45Q5TZF3 282 aa20.84■□□□□ 0.93
ZNF541-201ENST00000263351 EMILIN1Q9Y6C2 1016 aa20.84■□□□□ 0.93
ZNF541-201ENST00000263351 RPGRIP1LQ68CZ1 1315 aa20.83■□□□□ 0.93
ZNF541-201ENST00000263351 FAM83GA6ND36 823 aa20.83■□□□□ 0.92
ZNF541-201ENST00000263351 DCTN1Q14203 1278 aa20.82■□□□□ 0.92
ZNF541-201ENST00000263351 NPM1P06748 294 aaKnown RBP eCLIP20.82■□□□□ 0.92
ZNF541-201ENST00000263351 NUCB1Q02818 461 aa20.82■□□□□ 0.92
ZNF541-201ENST00000263351 AAMPQ13685 434 aa20.82■□□□□ 0.92
ZNF541-201ENST00000263351 CHD1LQ86WJ1 897 aa20.81■□□□□ 0.92
ZNF541-201ENST00000263351 HSCBQ8IWL3 235 aa20.81■□□□□ 0.92
ZNF541-201ENST00000263351 SIRT2Q8IXJ6 389 aa20.81■□□□□ 0.92
ZNF541-201ENST00000263351 CHMP5Q9NZZ3 219 aa20.81■□□□□ 0.92
ZNF541-201ENST00000263351 NSD2O96028 1365 aa20.8■□□□□ 0.92
ZNF541-201ENST00000263351 GOLGA6L3A6NEY3 463 aa20.8■□□□□ 0.92
ZNF541-201ENST00000263351 POLKQ9UBT6 870 aa20.8■□□□□ 0.92
ZNF541-201ENST00000263351 KIF2CQ99661 725 aa20.79■□□□□ 0.92
ZNF541-201ENST00000263351 RSPH6AQ9H0K4 717 aa20.79■□□□□ 0.92
ZNF541-201ENST00000263351 LRRC7Q96NW7 1537 aa20.79■□□□□ 0.92
ZNF541-201ENST00000263351 PIK3C2BO00750 1634 aa20.79■□□□□ 0.92
ZNF541-201ENST00000263351 PTPRMP28827 1452 aa20.79■□□□□ 0.92
ZNF541-201ENST00000263351 PPIP5K1Q6PFW1 1433 aa20.79■□□□□ 0.92
ZNF541-201ENST00000263351 YEATS2Q9ULM3 1422 aa20.79■□□□□ 0.92
ZNF541-201ENST00000263351 TERF2IPQ9NYB0 399 aa20.78■□□□□ 0.92
ZNF541-201ENST00000263351 KRT24Q2M2I5 525 aa20.78■□□□□ 0.92
ZNF541-201ENST00000263351 FSD2A1L4K1 749 aa20.77■□□□□ 0.91
ZNF541-201ENST00000263351 MLH3Q9UHC1 1453 aa20.76■□□□□ 0.91
ZNF541-201ENST00000263351 ZBTB7BO15156 539 aaPredicted RBP20.76■□□□□ 0.91
ZNF541-201ENST00000263351 RRS1Q15050 365 aaKnown RBP20.76■□□□□ 0.91
ZNF541-201ENST00000263351 NME9Q86XW9 330 aa20.76■□□□□ 0.91
ZNF541-201ENST00000263351 TNPO1Q92973 898 aaKnown RBP20.76■□□□□ 0.91
ZNF541-201ENST00000263351 VAMP4O75379 141 aa20.76■□□□□ 0.91
ZNF541-201ENST00000263351 GAS2L3Q86XJ1 694 aa20.75■□□□□ 0.91
ZNF541-201ENST00000263351 C8orf58Q8NAV2 365 aa20.75■□□□□ 0.91
ZNF541-201ENST00000263351 APBB1O00213 710 aa20.75■□□□□ 0.91
ZNF541-201ENST00000263351 CT47B1P0C2W7 299 aaPredicted RBP20.75■□□□□ 0.91
ZNF541-201ENST00000263351 KIF16BQ96L93 1317 aa20.75■□□□□ 0.91
ZNF541-201ENST00000263351 YTHDC2Q9H6S0 1430 aaKnown RBP20.74■□□□□ 0.91
ZNF541-201ENST00000263351 TBC1D9Q6ZT07 1266 aa20.74■□□□□ 0.91
ZNF541-201ENST00000263351 C16orf71Q8IYS4 520 aaPredicted RBP20.74■□□□□ 0.91
ZNF541-201ENST00000263351 MBIPQ9NS73 344 aa20.74■□□□□ 0.91
ZNF541-201ENST00000263351 L1TD1Q5T7N2 865 aaKnown RBP20.74■□□□□ 0.91
ZNF541-201ENST00000263351 MRPL50Q8N5N7 158 aaKnown RBP20.74■□□□□ 0.91
ZNF541-201ENST00000263351 ZMYM3Q14202 1370 aa20.73■□□□□ 0.91
ZNF541-201ENST00000263351 HSP90AB1P08238 724 aaKnown RBP20.73■□□□□ 0.91
ZNF541-201ENST00000263351 HDGFL2Q7Z4V5 671 aaPredicted RBP20.73■□□□□ 0.91
ZNF541-201ENST00000263351 IPO8O15397 1037 aaKnown RBP20.72■□□□□ 0.91
ZNF541-201ENST00000263351 DDIT3P35638 169 aa20.72■□□□□ 0.91
ZNF541-201ENST00000263351 OTUD7AQ8TE49 926 aaPredicted RBP20.72■□□□□ 0.91
ZNF541-201ENST00000263351 AK9Q5TCS8 1911 aa20.72■□□□□ 0.91
ZNF541-201ENST00000263351 RBM25P49756 843 aaKnown RBP20.71■□□□□ 0.91
ZNF541-201ENST00000263351 STAG3Q9UJ98 1225 aa20.71■□□□□ 0.91
ZNF541-201ENST00000263351 PNPLA6Q8IY17 1366 aa20.7■□□□□ 0.9
ZNF541-201ENST00000263351 IL16Q14005 1332 aa20.7■□□□□ 0.9
ZNF541-201ENST00000263351 PUS7Q96PZ0 661 aaKnown RBP20.7■□□□□ 0.9
ZNF541-201ENST00000263351 GAS2L2Q8NHY3 880 aa20.7■□□□□ 0.9
ZNF541-201ENST00000263351 ERBB4Q15303 1308 aa20.69■□□□□ 0.9
ZNF541-201ENST00000263351 FCHSD2O94868 740 aa20.69■□□□□ 0.9
ZNF541-201ENST00000263351 SSFA2P28290 1259 aa20.69■□□□□ 0.9
ZNF541-201ENST00000263351 GSPT1P15170 499 aaKnown RBP20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms