RNA–Protein interactions for RNA: ENST00000262188.12

SMARCD3-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCD3, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-201ENST00000262188 ANP32CO43423 234 aa37.5■■■■□ 3.59
SMARCD3-201ENST00000262188 NME9Q86XW9 330 aa37.5■■■■□ 3.59
SMARCD3-201ENST00000262188 KIF1AQ12756 1690 aa37.5■■■■□ 3.59
SMARCD3-201ENST00000262188 GGNBP2Q9H3C7 697 aa37.49■■■■□ 3.59
SMARCD3-201ENST00000262188 TTC21BQ7Z4L5 1316 aa37.49■■■■□ 3.59
SMARCD3-201ENST00000262188 CGNL1Q0VF96 1302 aa37.48■■■■□ 3.59
SMARCD3-201ENST00000262188 SSH2Q76I76 1423 aa37.48■■■■□ 3.59
SMARCD3-201ENST00000262188 FYB1O15117 783 aa37.48■■■■□ 3.59
SMARCD3-201ENST00000262188 PAK3O75914 559 aaPredicted RBP37.47■■■■□ 3.59
SMARCD3-201ENST00000262188 PRKRIP1Q9H875 184 aaPredicted RBP37.47■■■■□ 3.59
SMARCD3-201ENST00000262188 PIP4K2BP78356 416 aa37.44■■■■□ 3.58
SMARCD3-201ENST00000262188 KRT28Q7Z3Y7 464 aa37.44■■■■□ 3.58
SMARCD3-201ENST00000262188 UBAP1LF5GYI3 381 aa37.44■■■■□ 3.58
SMARCD3-201ENST00000262188 NUTM2GQ5VZR2 741 aa37.42■■■■□ 3.58
SMARCD3-201ENST00000262188 ROBO1Q9Y6N7 1651 aa37.41■■■■□ 3.58
SMARCD3-201ENST00000262188 KIF20BQ96Q89 1820 aa37.41■■■■□ 3.58
SMARCD3-201ENST00000262188 TNNT2P45379 298 aaPredicted RBP37.4■■■■□ 3.58
SMARCD3-201ENST00000262188 TOM1O60784 492 aa37.39■■■■□ 3.58
SMARCD3-201ENST00000262188 NPHP3Q7Z494 1330 aa37.38■■■■□ 3.57
SMARCD3-201ENST00000262188 NPC1L1Q9UHC9 1359 aa37.37■■■■□ 3.57
SMARCD3-201ENST00000262188 PARD3Q8TEW0 1356 aa37.36■■■■□ 3.57
SMARCD3-201ENST00000262188 PLEKHG5O94827 1062 aa37.35■■■■□ 3.57
SMARCD3-201ENST00000262188 PIK3C2AO00443 1686 aa37.35■■■■□ 3.57
SMARCD3-201ENST00000262188 TRPM3Q9HCF6 1732 aaPredicted RBP37.35■■■■□ 3.57
SMARCD3-201ENST00000262188 IQSEC2Q5JU85 1478 aa37.34■■■■□ 3.57
SMARCD3-201ENST00000262188 PXDNQ92626 1479 aa37.34■■■■□ 3.57
SMARCD3-201ENST00000262188 LMOD2Q6P5Q4 547 aa37.34■■■■□ 3.57
SMARCD3-201ENST00000262188 MORC1Q86VD1 984 aa37.34■■■■□ 3.57
SMARCD3-201ENST00000262188 ABTB2Q8N961 1025 aa37.33■■■■□ 3.57
SMARCD3-201ENST00000262188 TTC21AQ8NDW8 1320 aa37.33■■■■□ 3.57
SMARCD3-201ENST00000262188 FBLN1P23142 703 aa37.33■■■■□ 3.57
SMARCD3-201ENST00000262188 NSD2O96028 1365 aa37.3■■■■□ 3.56
SMARCD3-201ENST00000262188 NHSL1Q5SYE7 1610 aa37.29■■■■□ 3.56
SMARCD3-201ENST00000262188 RALBP1Q15311 655 aa37.29■■■■□ 3.56
SMARCD3-201ENST00000262188 NLRP6P59044 892 aa37.28■■■■□ 3.56
SMARCD3-201ENST00000262188 ANKRD26Q9UPS8 1709 aa37.28■■■■□ 3.56
SMARCD3-201ENST00000262188 SOX12O15370 315 aa37.27■■■■□ 3.56
SMARCD3-201ENST00000262188 CCDC184Q52MB2 194 aa37.27■■■■□ 3.56
SMARCD3-201ENST00000262188 COG3Q96JB2 828 aa37.27■■■■□ 3.56
SMARCD3-201ENST00000262188 SOS2Q07890 1332 aaPredicted RBP37.26■■■■□ 3.56
SMARCD3-201ENST00000262188 OVOS2A0A0J9YW53 1432 aa37.25■■■■□ 3.55
SMARCD3-201ENST00000262188 OVOS2Q6IE36 1432 aa37.25■■■■□ 3.55
SMARCD3-201ENST00000262188 BRD4O60885 1362 aaPredicted RBP37.23■■■■□ 3.55
SMARCD3-201ENST00000262188 PPP2R1AP30153 589 aa37.22■■■■□ 3.55
SMARCD3-201ENST00000262188 MARF1Q9Y4F3 1742 aaKnown RBP37.22■■■■□ 3.55
SMARCD3-201ENST00000262188 ALS2Q96Q42 1657 aa37.21■■■■□ 3.55
SMARCD3-201ENST00000262188 MYBBP1AQ9BQG0 1328 aaKnown RBP37.21■■■■□ 3.55
SMARCD3-201ENST00000262188 SBNO1A3KN83 1393 aa37.21■■■■□ 3.55
SMARCD3-201ENST00000262188 SPATA31A3Q5VYP0 1347 aa37.2■■■■□ 3.55
SMARCD3-201ENST00000262188 TNS3Q68CZ2 1445 aa37.2■■■■□ 3.55
SMARCD3-201ENST00000262188 USP31Q70CQ4 1352 aa37.19■■■■□ 3.54
SMARCD3-201ENST00000262188 AHDC1Q5TGY3 1603 aaPredicted RBP37.17■■■■□ 3.54
SMARCD3-201ENST00000262188 CABLES1Q8TDN4 633 aa37.15■■■■□ 3.54
SMARCD3-201ENST00000262188 RRS1Q15050 365 aaKnown RBP37.13■■■■□ 3.53
SMARCD3-201ENST00000262188 PHLPP1O60346 1717 aa37.13■■■■□ 3.53
SMARCD3-201ENST00000262188 NLRP13Q86W25 1043 aa37.13■■■■□ 3.53
SMARCD3-201ENST00000262188 USP54Q70EL1 1684 aa37.09■■■■□ 3.53
SMARCD3-201ENST00000262188 MED1Q15648 1581 aaPredicted RBP37.09■■■■□ 3.53
SMARCD3-201ENST00000262188 MTHFSP49914 203 aa37.09■■■■□ 3.53
SMARCD3-201ENST00000262188 EMILIN1Q9Y6C2 1016 aa37.09■■■■□ 3.53
SMARCD3-201ENST00000262188 COL16A1Q07092 1604 aaPredicted RBP37.07■■■■□ 3.53
SMARCD3-201ENST00000262188 PPM1GO15355 546 aaPredicted RBP37.07■■■■□ 3.52
SMARCD3-201ENST00000262188 MRS2Q9HD23 443 aa37.07■■■■□ 3.52
SMARCD3-201ENST00000262188 POLKQ9UBT6 870 aa37.06■■■■□ 3.52
SMARCD3-201ENST00000262188 ARHGEF10O15013 1369 aa37.05■■■■□ 3.52
SMARCD3-201ENST00000262188 MAP2P11137 1827 aaKnown RBP37.05■■■■□ 3.52
SMARCD3-201ENST00000262188 CCER2I3L3R5 266 aa37.05■■■■□ 3.52
SMARCD3-201ENST00000262188 USP19O94966 1318 aa37.05■■■■□ 3.52
SMARCD3-201ENST00000262188 LRRC59Q96AG4 307 aaKnown RBP37.04■■■■□ 3.52
SMARCD3-201ENST00000262188 GCP02774 474 aa37.02■■■■□ 3.52
SMARCD3-201ENST00000262188 ZBTB7CA1YPR0 619 aa37.01■■■■□ 3.52
SMARCD3-201ENST00000262188 SLIT3O75094 1523 aa37.01■■■■□ 3.52
SMARCD3-201ENST00000262188 AATKQ6ZMQ8 1374 aa37.01■■■■□ 3.51
SMARCD3-201ENST00000262188 NFAT5O94916 1531 aa37■■■■□ 3.51
SMARCD3-201ENST00000262188 MAP3K19Q56UN5 1328 aa36.99■■■■□ 3.51
SMARCD3-201ENST00000262188 ANP32EQ9BTT0 268 aa36.98■■■■□ 3.51
SMARCD3-201ENST00000262188 CRYBG1Q9Y4K1 1723 aa36.98■■■■□ 3.51
SMARCD3-201ENST00000262188 PHRF1Q9P1Y6 1649 aaKnown RBP36.98■■■■□ 3.51
SMARCD3-201ENST00000262188 ZC3H6P61129 1189 aaKnown RBP36.97■■■■□ 3.51
SMARCD3-201ENST00000262188 ERICH6Q7L0X2 663 aa36.97■■■■□ 3.51
SMARCD3-201ENST00000262188 PNPLA6Q8IY17 1366 aa36.96■■■■□ 3.51
SMARCD3-201ENST00000262188 PEAK1Q9H792 1746 aa36.96■■■■□ 3.51
SMARCD3-201ENST00000262188 HSPA1LP34931 641 aa36.95■■■■□ 3.51
SMARCD3-201ENST00000262188 KCNH5Q8NCM2 988 aa36.94■■■■□ 3.5
SMARCD3-201ENST00000262188 PRKCSHP14314 528 aaPredicted RBP36.93■■■■□ 3.5
SMARCD3-201ENST00000262188 LTN1O94822 1766 aa36.91■■■■□ 3.5
SMARCD3-201ENST00000262188 SMG6Q86US8 1419 aaKnown RBP36.9■■■■□ 3.5
SMARCD3-201ENST00000262188 ABCA3Q99758 1704 aa36.9■■■■□ 3.5
SMARCD3-201ENST00000262188 HAP1P54257 671 aaPredicted RBP36.89■■■■□ 3.5
SMARCD3-201ENST00000262188 AMPHP49418 695 aa36.89■■■■□ 3.5
SMARCD3-201ENST00000262188 HSP90AB2PQ58FF8 381 aa36.88■■■■□ 3.49
SMARCD3-201ENST00000262188 FAM9BQ8IZU0 186 aa36.87■■■■□ 3.49
SMARCD3-201ENST00000262188 ARHGEF25Q86VW2 580 aa36.87■■■■□ 3.49
SMARCD3-201ENST00000262188 COL3A1P02461 1466 aaPredicted RBP36.85■■■■□ 3.49
SMARCD3-201ENST00000262188 CHRNA2Q15822 529 aa36.85■■■■□ 3.49
SMARCD3-201ENST00000262188 KIAA0232Q92628 1395 aa36.85■■■■□ 3.49
SMARCD3-201ENST00000262188 PNISRQ8TF01 805 aaKnown RBP36.84■■■■□ 3.49
SMARCD3-201ENST00000262188 CDK12Q9NYV4 1490 aaPredicted RBP36.84■■■■□ 3.49
SMARCD3-201ENST00000262188 CFAP53Q96M91 514 aa36.84■■■■□ 3.49
SMARCD3-201ENST00000262188 HOXC9P31274 260 aa36.83■■■■□ 3.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms