RNA–Protein interactions for RNA: ENST00000243082.4

HOXC11-201, Transcript of homeobox C11, humanhuman

TSL 3 BASIC

Gene HOXC11, Length 2,039 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-201ENST00000243082 PHF23Q9BUL5 403 aaPredicted RBP24.27■■□□□ 1.48
HOXC11-201ENST00000243082 PNPLA6Q8IY17 1366 aa24.26■■□□□ 1.47
HOXC11-201ENST00000243082 AMOTL2Q9Y2J4 779 aa24.25■■□□□ 1.47
HOXC11-201ENST00000243082 RRP7AQ9Y3A4 280 aaKnown RBP24.25■■□□□ 1.47
HOXC11-201ENST00000243082 NKTRP30414 1462 aaKnown RBP24.24■■□□□ 1.47
HOXC11-201ENST00000243082 NEUROD2Q15784 382 aa24.23■■□□□ 1.47
HOXC11-201ENST00000243082 NCBP3Q53F19 620 aaKnown RBP24.23■■□□□ 1.47
HOXC11-201ENST00000243082 MON2Q7Z3U7 1717 aa24.23■■□□□ 1.47
HOXC11-201ENST00000243082 RIMS1Q86UR5 1692 aaKnown RBP24.22■■□□□ 1.47
HOXC11-201ENST00000243082 CCDC27Q2M243 656 aa24.22■■□□□ 1.47
HOXC11-201ENST00000243082 DIP2AQ14689 1571 aa24.22■■□□□ 1.47
HOXC11-201ENST00000243082 CEP170BQ9Y4F5 1589 aaPredicted RBP24.22■■□□□ 1.47
HOXC11-201ENST00000243082 NME9Q86XW9 330 aa24.22■■□□□ 1.47
HOXC11-201ENST00000243082 POLKQ9UBT6 870 aa24.22■■□□□ 1.47
HOXC11-201ENST00000243082 AKAP12Q02952 1782 aa24.21■■□□□ 1.47
HOXC11-201ENST00000243082 ZNF692Q9BU19 519 aaPredicted RBP24.21■■□□□ 1.47
HOXC11-201ENST00000243082 U2SURPO15042 1029 aaKnown RBP24.2■■□□□ 1.47
HOXC11-201ENST00000243082 FBLN1P23142 703 aa24.2■■□□□ 1.47
HOXC11-201ENST00000243082 PLEKHF1Q96S99 279 aa24.2■■□□□ 1.47
HOXC11-201ENST00000243082 PTCH1Q13635 1447 aa24.2■■□□□ 1.46
HOXC11-201ENST00000243082 DIAPH1O60610 1272 aaKnown RBP24.19■■□□□ 1.46
HOXC11-201ENST00000243082 WDR63Q8IWG1 891 aa24.19■■□□□ 1.46
HOXC11-201ENST00000243082 ZRANB1Q9UGI0 708 aa24.18■■□□□ 1.46
HOXC11-201ENST00000243082 ITSN1Q15811 1721 aa24.18■■□□□ 1.46
HOXC11-201ENST00000243082 TOPAZ1Q8N9V7 1692 aa24.17■■□□□ 1.46
HOXC11-201ENST00000243082 PLEKHG3A1L390 1219 aa24.17■■□□□ 1.46
HOXC11-201ENST00000243082 C20orf194Q5TEA3 1177 aa24.17■■□□□ 1.46
HOXC11-201ENST00000243082 CRBNQ96SW2 442 aa24.17■■□□□ 1.46
HOXC11-201ENST00000243082 ADAMTSL3P82987 1691 aa24.15■■□□□ 1.46
HOXC11-201ENST00000243082 MAP2P11137 1827 aaKnown RBP24.15■■□□□ 1.46
HOXC11-201ENST00000243082 AATKQ6ZMQ8 1374 aa24.15■■□□□ 1.46
HOXC11-201ENST00000243082 RBM19Q9Y4C8 960 aaKnown RBP24.15■■□□□ 1.46
HOXC11-201ENST00000243082 NUTM2FA1L443 756 aa24.14■■□□□ 1.45
HOXC11-201ENST00000243082 DNAJC5Q9H3Z4 198 aa24.14■■□□□ 1.45
HOXC11-201ENST00000243082 ACEP12821 1306 aa24.14■■□□□ 1.45
HOXC11-201ENST00000243082 XRN1Q8IZH2 1706 aaKnown RBP24.13■■□□□ 1.45
HOXC11-201ENST00000243082 COG3Q96JB2 828 aa24.13■■□□□ 1.45
HOXC11-201ENST00000243082 PPM1GO15355 546 aaPredicted RBP24.12■■□□□ 1.45
HOXC11-201ENST00000243082 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.12■■□□□ 1.45
HOXC11-201ENST00000243082 EMILIN1Q9Y6C2 1016 aa24.12■■□□□ 1.45
HOXC11-201ENST00000243082 TMPOP42166 694 aaKnown RBP24.11■■□□□ 1.45
HOXC11-201ENST00000243082 NRKQ7Z2Y5 1582 aa24.1■■□□□ 1.45
HOXC11-201ENST00000243082 BCAR3O75815 825 aa24.1■■□□□ 1.45
HOXC11-201ENST00000243082 TTC21BQ7Z4L5 1316 aa24.1■■□□□ 1.45
HOXC11-201ENST00000243082 PIK3R4Q99570 1358 aa24.1■■□□□ 1.45
HOXC11-201ENST00000243082 FCHSD2O94868 740 aa24.08■■□□□ 1.45
HOXC11-201ENST00000243082 KCNA6P17658 529 aa24.08■■□□□ 1.45
HOXC11-201ENST00000243082 USP6P35125 1406 aa24.08■■□□□ 1.45
HOXC11-201ENST00000243082 ZNF142P52746 1687 aaPredicted RBP24.08■■□□□ 1.45
HOXC11-201ENST00000243082 PNNQ9H307 717 aaKnown RBP24.08■■□□□ 1.45
HOXC11-201ENST00000243082 MAPK8IP3Q9UPT6 1336 aa24.08■■□□□ 1.45
HOXC11-201ENST00000243082 CDK12Q9NYV4 1490 aaPredicted RBP24.08■■□□□ 1.45
HOXC11-201ENST00000243082 TRIM35Q9UPQ4 493 aa24.08■■□□□ 1.44
HOXC11-201ENST00000243082 ANKLE2Q86XL3 938 aa24.07■■□□□ 1.44
HOXC11-201ENST00000243082 IL13P35225 146 aa24.06■■□□□ 1.44
HOXC11-201ENST00000243082 RSPH6AQ9H0K4 717 aa24.06■■□□□ 1.44
HOXC11-201ENST00000243082 SSH2Q76I76 1423 aa24.05■■□□□ 1.44
HOXC11-201ENST00000243082 RRS1Q15050 365 aaKnown RBP24.05■■□□□ 1.44
HOXC11-201ENST00000243082 LRRC7Q96NW7 1537 aa24.04■■□□□ 1.44
HOXC11-201ENST00000243082 MYH16Q9H6N6 1097 aa24.04■■□□□ 1.44
HOXC11-201ENST00000243082 OVOS2A0A0J9YW53 1432 aa24.03■■□□□ 1.44
HOXC11-201ENST00000243082 OVOS2Q6IE36 1432 aa24.03■■□□□ 1.44
HOXC11-201ENST00000243082 SETD1BQ9UPS6 1966 aaKnown RBP24.03■■□□□ 1.44
HOXC11-201ENST00000243082 RIPK4P57078 832 aa24.02■■□□□ 1.44
HOXC11-201ENST00000243082 PMFBP1Q8TBY8 1022 aa24.02■■□□□ 1.44
HOXC11-201ENST00000243082 PRKAR2BP31323 418 aa24.01■■□□□ 1.43
HOXC11-201ENST00000243082 RARSP54136 660 aaKnown RBP24.01■■□□□ 1.43
HOXC11-201ENST00000243082 RGPD8O14715 1765 aaPredicted RBP24■■□□□ 1.43
HOXC11-201ENST00000243082 HMOX1P09601 288 aa23.98■■□□□ 1.43
HOXC11-201ENST00000243082 CHD2O14647 1828 aaKnown RBP23.98■■□□□ 1.43
HOXC11-201ENST00000243082 ANKARQ7Z5J8 1434 aa23.98■■□□□ 1.43
HOXC11-201ENST00000243082 IL16Q14005 1332 aa23.98■■□□□ 1.43
HOXC11-201ENST00000243082 TTC21AQ8NDW8 1320 aa23.97■■□□□ 1.43
HOXC11-201ENST00000243082 USP31Q70CQ4 1352 aa23.97■■□□□ 1.43
HOXC11-201ENST00000243082 PHACTR3Q96KR7 559 aa23.97■■□□□ 1.43
HOXC11-201ENST00000243082 FANCIQ9NVI1 1328 aa23.97■■□□□ 1.43
HOXC11-201ENST00000243082 PDE3AQ14432 1141 aa23.96■■□□□ 1.43
HOXC11-201ENST00000243082 NALCNQ8IZF0 1738 aa23.96■■□□□ 1.43
HOXC11-201ENST00000243082 NGDNQ8NEJ9 315 aaKnown RBP23.96■■□□□ 1.43
HOXC11-201ENST00000243082 TSR2Q969E8 191 aaKnown RBP23.96■■□□□ 1.43
HOXC11-201ENST00000243082 FMN2Q9NZ56 1722 aa23.94■■□□□ 1.42
HOXC11-201ENST00000243082 NEFMP07197 916 aa23.94■■□□□ 1.42
HOXC11-201ENST00000243082 NFE2L2Q16236 605 aa23.93■■□□□ 1.42
HOXC11-201ENST00000243082 CT47B1P0C2W7 299 aaPredicted RBP23.93■■□□□ 1.42
HOXC11-201ENST00000243082 KDM2BQ8NHM5 1336 aa23.91■■□□□ 1.42
HOXC11-201ENST00000243082 EXOSC9Q06265 439 aaKnown RBP23.91■■□□□ 1.42
HOXC11-201ENST00000243082 EIF4A2Q14240 407 aaKnown RBP23.9■■□□□ 1.42
HOXC11-201ENST00000243082 CANXP27824 592 aaKnown RBP23.89■■□□□ 1.42
HOXC11-201ENST00000243082 FRAT1Q92837 279 aaPredicted RBP23.89■■□□□ 1.42
HOXC11-201ENST00000243082 PEAK1Q9H792 1746 aa23.89■■□□□ 1.42
HOXC11-201ENST00000243082 NPHP4O75161 1426 aaPredicted RBP23.89■■□□□ 1.42
HOXC11-201ENST00000243082 BCL2L13Q9BXK5 485 aa23.89■■□□□ 1.41
HOXC11-201ENST00000243082 PANK1Q8TE04 598 aa23.88■■□□□ 1.41
HOXC11-201ENST00000243082 PIK3C2AO00443 1686 aa23.87■■□□□ 1.41
HOXC11-201ENST00000243082 HSP90AB2PQ58FF8 381 aa23.86■■□□□ 1.41
HOXC11-201ENST00000243082 TCERG1O14776 1098 aaKnown RBP23.86■■□□□ 1.41
HOXC11-201ENST00000243082 RBM33Q96EV2 1170 aaKnown RBP23.86■■□□□ 1.41
HOXC11-201ENST00000243082 CENPQQ7L2Z9 268 aaPredicted RBP23.85■■□□□ 1.41
HOXC11-201ENST00000243082 COG6Q9Y2V7 657 aa23.85■■□□□ 1.41
HOXC11-201ENST00000243082 MAP3K19Q56UN5 1328 aa23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms