RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 COL3A1P02461 1466 aaPredicted RBP23.85■■□□□ 1.41
CPSF3-201ENST00000238112 FYB1O15117 783 aa23.85■■□□□ 1.41
CPSF3-201ENST00000238112 NLRP1Q9C000 1473 aa23.84■■□□□ 1.41
CPSF3-201ENST00000238112 MED14O60244 1454 aa23.84■■□□□ 1.41
CPSF3-201ENST00000238112 TRIM35Q9UPQ4 493 aa23.84■■□□□ 1.41
CPSF3-201ENST00000238112 HDGFL2Q7Z4V5 671 aaPredicted RBP23.83■■□□□ 1.41
CPSF3-201ENST00000238112 YTHDC2Q9H6S0 1430 aaKnown RBP23.83■■□□□ 1.41
CPSF3-201ENST00000238112 YEATS2Q9ULM3 1422 aa23.83■■□□□ 1.41
CPSF3-201ENST00000238112 RICTORQ6R327 1708 aa23.83■■□□□ 1.4
CPSF3-201ENST00000238112 TMEM131LA2VDJ0 1609 aa23.82■■□□□ 1.4
CPSF3-201ENST00000238112 IL27Q8NEV9 243 aa23.82■■□□□ 1.4
CPSF3-201ENST00000238112 IL16Q14005 1332 aa23.82■■□□□ 1.4
CPSF3-201ENST00000238112 PNNQ9H307 717 aaKnown RBP23.82■■□□□ 1.4
CPSF3-201ENST00000238112 PREX1Q8TCU6 1659 aa23.81■■□□□ 1.4
CPSF3-201ENST00000238112 MYO5BQ9ULV0 1848 aa23.81■■□□□ 1.4
CPSF3-201ENST00000238112 CD163L1Q9NR16 1453 aa23.81■■□□□ 1.4
CPSF3-201ENST00000238112 DIAPH1O60610 1272 aaKnown RBP23.81■■□□□ 1.4
CPSF3-201ENST00000238112 TRIM27P14373 513 aa23.81■■□□□ 1.4
CPSF3-201ENST00000238112 SSH1Q8WYL5 1049 aa23.81■■□□□ 1.4
CPSF3-201ENST00000238112 RIPK4P57078 832 aa23.8■■□□□ 1.4
CPSF3-201ENST00000238112 DDX19BQ9UMR2 479 aa23.8■■□□□ 1.4
CPSF3-201ENST00000238112 ANKRD26Q9UPS8 1709 aa23.8■■□□□ 1.4
CPSF3-201ENST00000238112 TBC1D32Q96NH3 1257 aa23.79■■□□□ 1.4
CPSF3-201ENST00000238112 CLTCQ00610 1675 aaKnown RBP23.79■■□□□ 1.4
CPSF3-201ENST00000238112 ITPRIPQ8IWB1 547 aa23.79■■□□□ 1.4
CPSF3-201ENST00000238112 ATF7IPQ6VMQ6 1270 aa23.78■■□□□ 1.4
CPSF3-201ENST00000238112 CDK19Q9BWU1 502 aa23.77■■□□□ 1.4
CPSF3-201ENST00000238112 HDAC1Q13547 482 aaPredicted RBP23.76■■□□□ 1.39
CPSF3-201ENST00000238112 STAG3Q9UJ98 1225 aa23.76■■□□□ 1.39
CPSF3-201ENST00000238112 NOB1Q9ULX3 412 aaKnown RBP23.76■■□□□ 1.39
CPSF3-201ENST00000238112 PNPLA6Q8IY17 1366 aa23.75■■□□□ 1.39
CPSF3-201ENST00000238112 SLKQ9H2G2 1235 aaPredicted RBP23.75■■□□□ 1.39
CPSF3-201ENST00000238112 CABP1Q9NZU7 370 aa23.75■■□□□ 1.39
CPSF3-201ENST00000238112 KIF16BQ96L93 1317 aa23.74■■□□□ 1.39
CPSF3-201ENST00000238112 FBXO31Q5XUX0 539 aaPredicted RBP23.73■■□□□ 1.39
CPSF3-201ENST00000238112 ALKQ9UM73 1620 aa23.73■■□□□ 1.39
CPSF3-201ENST00000238112 IPO8O15397 1037 aaKnown RBP23.73■■□□□ 1.39
CPSF3-201ENST00000238112 ARHGEF40Q8TER5 1519 aa23.72■■□□□ 1.39
CPSF3-201ENST00000238112 FCHSD2O94868 740 aa23.71■■□□□ 1.39
CPSF3-201ENST00000238112 TMEM57Q8N5G2 664 aa23.71■■□□□ 1.39
CPSF3-201ENST00000238112 TBC1D2Q9BYX2 928 aa23.69■■□□□ 1.38
CPSF3-201ENST00000238112 ALDH1L2Q3SY69 923 aa23.68■■□□□ 1.38
CPSF3-201ENST00000238112 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.68■■□□□ 1.38
CPSF3-201ENST00000238112 BRPF3Q9ULD4 1205 aa23.68■■□□□ 1.38
CPSF3-201ENST00000238112 KIF20BQ96Q89 1820 aa23.68■■□□□ 1.38
CPSF3-201ENST00000238112 RTN4Q9NQC3 1192 aaKnown RBP23.68■■□□□ 1.38
CPSF3-201ENST00000238112 PRKAR2BP31323 418 aa23.67■■□□□ 1.38
CPSF3-201ENST00000238112 SMC5Q8IY18 1101 aa23.67■■□□□ 1.38
CPSF3-201ENST00000238112 ZBTB40Q9NUA8 1239 aa23.67■■□□□ 1.38
CPSF3-201ENST00000238112 ANTXR1Q9H6X2 564 aa23.66■■□□□ 1.38
CPSF3-201ENST00000238112 LRRC7Q96NW7 1537 aa23.66■■□□□ 1.38
CPSF3-201ENST00000238112 CDC42BPGQ6DT37 1551 aa23.66■■□□□ 1.38
CPSF3-201ENST00000238112 C22orf23Q9BZE7 217 aa23.65■■□□□ 1.38
CPSF3-201ENST00000238112 RSPH6AQ9H0K4 717 aa23.65■■□□□ 1.38
CPSF3-201ENST00000238112 MFAP1P55081 439 aaKnown RBP23.65■■□□□ 1.38
CPSF3-201ENST00000238112 POLKQ9UBT6 870 aa23.64■■□□□ 1.38
CPSF3-201ENST00000238112 FAM135BQ49AJ0 1406 aa23.64■■□□□ 1.37
CPSF3-201ENST00000238112 ZNF428Q96B54 188 aa23.64■■□□□ 1.37
CPSF3-201ENST00000238112 ATP7BP35670 1465 aa23.64■■□□□ 1.37
CPSF3-201ENST00000238112 DLC1Q96QB1 1528 aa23.62■■□□□ 1.37
CPSF3-201ENST00000238112 WAPLQ7Z5K2 1190 aa23.62■■□□□ 1.37
CPSF3-201ENST00000238112 CALD1Q05682 793 aaKnown RBP23.61■■□□□ 1.37
CPSF3-201ENST00000238112 FBLN1P23142 703 aa23.6■■□□□ 1.37
CPSF3-201ENST00000238112 NFE2L2Q16236 605 aa23.6■■□□□ 1.37
CPSF3-201ENST00000238112 HMOX1P09601 288 aa23.59■■□□□ 1.37
CPSF3-201ENST00000238112 BRPF1P55201 1214 aaPredicted RBP23.59■■□□□ 1.37
CPSF3-201ENST00000238112 NUCB1Q02818 461 aa23.59■■□□□ 1.37
CPSF3-201ENST00000238112 PPIP5K1Q6PFW1 1433 aa23.59■■□□□ 1.37
CPSF3-201ENST00000238112 CHMP4BQ9H444 224 aaKnown RBP23.57■■□□□ 1.36
CPSF3-201ENST00000238112 PPP6R1Q9UPN7 881 aa23.57■■□□□ 1.36
CPSF3-201ENST00000238112 A2ML1A8K2U0 1454 aa23.57■■□□□ 1.36
CPSF3-201ENST00000238112 RIMS2Q9UQ26 1411 aa23.57■■□□□ 1.36
CPSF3-201ENST00000238112 PHACTR3Q96KR7 559 aa23.56■■□□□ 1.36
CPSF3-201ENST00000238112 SPRYD3Q8NCJ5 442 aa23.55■■□□□ 1.36
CPSF3-201ENST00000238112 CHD1LQ86WJ1 897 aa23.55■■□□□ 1.36
CPSF3-201ENST00000238112 LNPKQ9C0E8 428 aa23.55■■□□□ 1.36
CPSF3-201ENST00000238112 EMILIN1Q9Y6C2 1016 aa23.55■■□□□ 1.36
CPSF3-201ENST00000238112 EDC4Q6P2E9 1401 aaKnown RBP23.55■■□□□ 1.36
CPSF3-201ENST00000238112 GNAI1P63096 354 aa23.54■■□□□ 1.36
CPSF3-201ENST00000238112 THUMPD2Q9BTF0 503 aaKnown RBP23.54■■□□□ 1.36
CPSF3-201ENST00000238112 VAMP4O75379 141 aa23.54■■□□□ 1.36
CPSF3-201ENST00000238112 IFT57Q9NWB7 429 aa23.54■■□□□ 1.36
CPSF3-201ENST00000238112 ARHGAP45Q92619 1136 aa23.53■■□□□ 1.36
CPSF3-201ENST00000238112 MRPL50Q8N5N7 158 aaKnown RBP23.53■■□□□ 1.36
CPSF3-201ENST00000238112 WASLO00401 505 aaPredicted RBP23.52■■□□□ 1.36
CPSF3-201ENST00000238112 IL13P35225 146 aa23.52■■□□□ 1.36
CPSF3-201ENST00000238112 HSCBQ8IWL3 235 aa23.52■■□□□ 1.36
CPSF3-201ENST00000238112 FAM69CQ0P6D2 419 aa23.51■■□□□ 1.35
CPSF3-201ENST00000238112 NME9Q86XW9 330 aa23.51■■□□□ 1.35
CPSF3-201ENST00000238112 CPSF1Q10570 1443 aaKnown RBP23.51■■□□□ 1.35
CPSF3-201ENST00000238112 CDK12Q9NYV4 1490 aaPredicted RBP23.51■■□□□ 1.35
CPSF3-201ENST00000238112 MAP2P11137 1827 aaKnown RBP23.5■■□□□ 1.35
CPSF3-201ENST00000238112 ZBTB7BO15156 539 aaPredicted RBP23.5■■□□□ 1.35
CPSF3-201ENST00000238112 CHMP5Q9NZZ3 219 aa23.5■■□□□ 1.35
CPSF3-201ENST00000238112 AGLP35573 1532 aa23.5■■□□□ 1.35
CPSF3-201ENST00000238112 LMOD3Q0VAK6 560 aa23.5■■□□□ 1.35
CPSF3-201ENST00000238112 GCC1Q96CN9 775 aa23.5■■□□□ 1.35
CPSF3-201ENST00000238112 PTCH1Q13635 1447 aa23.5■■□□□ 1.35
CPSF3-201ENST00000238112 SPATA31D1Q6ZQQ2 1576 aa23.5■■□□□ 1.35
CPSF3-201ENST00000238112 RIMBP3CA6NJZ7 1639 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms