RNA–Protein interactions for RNA: ENST00000216774.10

SRP54-201, Transcript of signal recognition particle 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SRP54, Length 2,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-201ENST00000216774 TRIM35Q9UPQ4 493 aa16.94■□□□□ 0.3
SRP54-201ENST00000216774 CD163L1Q9NR16 1453 aa16.94■□□□□ 0.3
SRP54-201ENST00000216774 SMC4Q9NTJ3 1288 aa16.93■□□□□ 0.3
SRP54-201ENST00000216774 PREX1Q8TCU6 1659 aa16.93■□□□□ 0.3
SRP54-201ENST00000216774 U2SURPO15042 1029 aaKnown RBP16.93■□□□□ 0.3
SRP54-201ENST00000216774 HDAC1Q13547 482 aaPredicted RBP16.93■□□□□ 0.3
SRP54-201ENST00000216774 SAFB2Q14151 953 aaKnown RBP eCLIP16.93■□□□□ 0.3
SRP54-201ENST00000216774 TSR2Q969E8 191 aaKnown RBP16.93■□□□□ 0.3
SRP54-201ENST00000216774 PNNQ9H307 717 aaKnown RBP16.93■□□□□ 0.3
SRP54-201ENST00000216774 GGNBP2Q9H3C7 697 aa16.93■□□□□ 0.3
SRP54-201ENST00000216774 PNPLA6Q8IY17 1366 aa16.92■□□□□ 0.3
SRP54-201ENST00000216774 FYB1O15117 783 aa16.92■□□□□ 0.3
SRP54-201ENST00000216774 EXOSC9Q06265 439 aaKnown RBP16.92■□□□□ 0.3
SRP54-201ENST00000216774 DDX19BQ9UMR2 479 aa16.92■□□□□ 0.3
SRP54-201ENST00000216774 YTHDC2Q9H6S0 1430 aaKnown RBP16.92■□□□□ 0.3
SRP54-201ENST00000216774 STK26Q9P289 416 aa16.91■□□□□ 0.3
SRP54-201ENST00000216774 MYO5BQ9ULV0 1848 aa16.91■□□□□ 0.3
SRP54-201ENST00000216774 TRIM27P14373 513 aa16.91■□□□□ 0.3
SRP54-201ENST00000216774 ATF7IPQ6VMQ6 1270 aa16.9■□□□□ 0.3
SRP54-201ENST00000216774 CDC42BPGQ6DT37 1551 aa16.9■□□□□ 0.3
SRP54-201ENST00000216774 SSH1Q8WYL5 1049 aa16.9■□□□□ 0.3
SRP54-201ENST00000216774 PRAM1Q96QH2 718 aa16.89■□□□□ 0.29
SRP54-201ENST00000216774 ANTXR1Q9H6X2 564 aa16.89■□□□□ 0.29
SRP54-201ENST00000216774 DIAPH1O60610 1272 aaKnown RBP16.89■□□□□ 0.29
SRP54-201ENST00000216774 HDGFL2Q7Z4V5 671 aaPredicted RBP16.89■□□□□ 0.29
SRP54-201ENST00000216774 POGKQ9P215 609 aa16.88■□□□□ 0.29
SRP54-201ENST00000216774 KIF16BQ96L93 1317 aa16.88■□□□□ 0.29
SRP54-201ENST00000216774 MINK1Q8N4C8 1332 aaPredicted RBP16.87■□□□□ 0.29
SRP54-201ENST00000216774 ARHGEF40Q8TER5 1519 aa16.87■□□□□ 0.29
SRP54-201ENST00000216774 KIF20BQ96Q89 1820 aa16.87■□□□□ 0.29
SRP54-201ENST00000216774 RIPK4P57078 832 aa16.87■□□□□ 0.29
SRP54-201ENST00000216774 YEATS2Q9ULM3 1422 aa16.87■□□□□ 0.29
SRP54-201ENST00000216774 IPO8O15397 1037 aaKnown RBP16.86■□□□□ 0.29
SRP54-201ENST00000216774 ITPRIPQ8IWB1 547 aa16.86■□□□□ 0.29
SRP54-201ENST00000216774 ALKQ9UM73 1620 aa16.86■□□□□ 0.29
SRP54-201ENST00000216774 ALDH1L2Q3SY69 923 aa16.86■□□□□ 0.29
SRP54-201ENST00000216774 SMC5Q8IY18 1101 aa16.86■□□□□ 0.29
SRP54-201ENST00000216774 TBC1D2Q9BYX2 928 aa16.86■□□□□ 0.29
SRP54-201ENST00000216774 BRPF3Q9ULD4 1205 aa16.86■□□□□ 0.29
SRP54-201ENST00000216774 FCHSD2O94868 740 aa16.85■□□□□ 0.29
SRP54-201ENST00000216774 NOB1Q9ULX3 412 aaKnown RBP16.85■□□□□ 0.29
SRP54-201ENST00000216774 ZNF428Q96B54 188 aa16.85■□□□□ 0.29
SRP54-201ENST00000216774 SLKQ9H2G2 1235 aaPredicted RBP16.84■□□□□ 0.29
SRP54-201ENST00000216774 ZBTB40Q9NUA8 1239 aa16.84■□□□□ 0.29
SRP54-201ENST00000216774 CDK19Q9BWU1 502 aa16.84■□□□□ 0.29
SRP54-201ENST00000216774 PPIP5K1Q6PFW1 1433 aa16.83■□□□□ 0.29
SRP54-201ENST00000216774 LRRC7Q96NW7 1537 aa16.83■□□□□ 0.28
SRP54-201ENST00000216774 DLC1Q96QB1 1528 aa16.83■□□□□ 0.28
SRP54-201ENST00000216774 BRPF1P55201 1214 aaPredicted RBP16.83■□□□□ 0.28
SRP54-201ENST00000216774 ATP7BP35670 1465 aa16.82■□□□□ 0.28
SRP54-201ENST00000216774 TMEM57Q8N5G2 664 aa16.82■□□□□ 0.28
SRP54-201ENST00000216774 FAM135BQ49AJ0 1406 aa16.82■□□□□ 0.28
SRP54-201ENST00000216774 C22orf23Q9BZE7 217 aa16.81■□□□□ 0.28
SRP54-201ENST00000216774 CABP1Q9NZU7 370 aa16.81■□□□□ 0.28
SRP54-201ENST00000216774 RTN4Q9NQC3 1192 aaKnown RBP16.8■□□□□ 0.28
SRP54-201ENST00000216774 RSPH6AQ9H0K4 717 aa16.8■□□□□ 0.28
SRP54-201ENST00000216774 NUCB1Q02818 461 aa16.79■□□□□ 0.28
SRP54-201ENST00000216774 CALD1Q05682 793 aaKnown RBP16.79■□□□□ 0.28
SRP54-201ENST00000216774 CHMP4BQ9H444 224 aaKnown RBP16.78■□□□□ 0.28
SRP54-201ENST00000216774 MFAP1P55081 439 aaKnown RBP16.77■□□□□ 0.28
SRP54-201ENST00000216774 POLKQ9UBT6 870 aa16.77■□□□□ 0.28
SRP54-201ENST00000216774 PRKAR2BP31323 418 aa16.77■□□□□ 0.27
SRP54-201ENST00000216774 FBXO31Q5XUX0 539 aaPredicted RBP16.76■□□□□ 0.27
SRP54-201ENST00000216774 ARHGAP45Q92619 1136 aa16.76■□□□□ 0.27
SRP54-201ENST00000216774 SENP3Q9H4L4 574 aaPredicted RBP16.76■□□□□ 0.27
SRP54-201ENST00000216774 PPP6R1Q9UPN7 881 aa16.76■□□□□ 0.27
SRP54-201ENST00000216774 PIK3R4Q99570 1358 aa16.76■□□□□ 0.27
SRP54-201ENST00000216774 NFE2L2Q16236 605 aa16.76■□□□□ 0.27
SRP54-201ENST00000216774 REREQ9P2R6 1566 aa16.75■□□□□ 0.27
SRP54-201ENST00000216774 STAG3Q9UJ98 1225 aa16.75■□□□□ 0.27
SRP54-201ENST00000216774 PTCH1Q13635 1447 aa16.74■□□□□ 0.27
SRP54-201ENST00000216774 CHMP5Q9NZZ3 219 aa16.74■□□□□ 0.27
SRP54-201ENST00000216774 SETD1AO15047 1707 aaKnown RBP16.74■□□□□ 0.27
SRP54-201ENST00000216774 EDC4Q6P2E9 1401 aaKnown RBP16.74■□□□□ 0.27
SRP54-201ENST00000216774 RBM25P49756 843 aaKnown RBP16.73■□□□□ 0.27
SRP54-201ENST00000216774 L1TD1Q5T7N2 865 aaKnown RBP16.73■□□□□ 0.27
SRP54-201ENST00000216774 CHD1LQ86WJ1 897 aa16.73■□□□□ 0.27
SRP54-201ENST00000216774 A2ML1A8K2U0 1454 aa16.73■□□□□ 0.27
SRP54-201ENST00000216774 CDK12Q9NYV4 1490 aaPredicted RBP16.73■□□□□ 0.27
SRP54-201ENST00000216774 AGLP35573 1532 aa16.73■□□□□ 0.27
SRP54-201ENST00000216774 RIMBP3CA6NJZ7 1639 aa16.73■□□□□ 0.27
SRP54-201ENST00000216774 RIMBP3BA6NNM3 1639 aa16.73■□□□□ 0.27
SRP54-201ENST00000216774 RIMBP3Q9UFD9 1639 aa16.73■□□□□ 0.27
SRP54-201ENST00000216774 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.73■□□□□ 0.275e-7■■□□□ 13.5
SRP54-201ENST00000216774 IFT57Q9NWB7 429 aa16.73■□□□□ 0.27
SRP54-201ENST00000216774 CPSF1Q10570 1443 aaKnown RBP16.73■□□□□ 0.27
SRP54-201ENST00000216774 GNAI1P63096 354 aa16.72■□□□□ 0.27
SRP54-201ENST00000216774 SPATA31D1Q6ZQQ2 1576 aa16.72■□□□□ 0.27
SRP54-201ENST00000216774 AATKQ6ZMQ8 1374 aa16.72■□□□□ 0.27
SRP54-201ENST00000216774 BMP2KLQ5H9B9 411 aa16.72■□□□□ 0.27
SRP54-201ENST00000216774 HSCBQ8IWL3 235 aa16.72■□□□□ 0.27
SRP54-201ENST00000216774 GCC1Q96CN9 775 aa16.72■□□□□ 0.27
SRP54-201ENST00000216774 ZBTB7BO15156 539 aaPredicted RBP16.71■□□□□ 0.27
SRP54-201ENST00000216774 VAMP4O75379 141 aa16.71■□□□□ 0.27
SRP54-201ENST00000216774 MCM4P33991 863 aa16.71■□□□□ 0.27
SRP54-201ENST00000216774 MRPL50Q8N5N7 158 aaKnown RBP16.71■□□□□ 0.27
SRP54-201ENST00000216774 RIMS2Q9UQ26 1411 aa16.71■□□□□ 0.27
SRP54-201ENST00000216774 NCOA3Q9Y6Q9 1424 aa16.71■□□□□ 0.27
SRP54-201ENST00000216774 MAP2P11137 1827 aaKnown RBP16.71■□□□□ 0.27
SRP54-201ENST00000216774 PHACTR3Q96KR7 559 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms