RNA–Protein interactions for RNA: ENST00000046640.7

CTNS-201, Transcript of cystinosin, lysosomal cystine transporter, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTNS, Length 2,866 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNS-201ENST00000046640 NSD2O96028 1365 aa16.88■□□□□ 0.29
CTNS-201ENST00000046640 TMPOP42166 694 aaKnown RBP16.88■□□□□ 0.29
CTNS-201ENST00000046640 DIAPH1O60610 1272 aaKnown RBP16.88■□□□□ 0.29
CTNS-201ENST00000046640 PDE3AQ14432 1141 aa16.88■□□□□ 0.29
CTNS-201ENST00000046640 RIMS2Q9UQ26 1411 aa16.88■□□□□ 0.29
CTNS-201ENST00000046640 HMOX1P09601 288 aa16.87■□□□□ 0.29
CTNS-201ENST00000046640 RIPK4P57078 832 aa16.87■□□□□ 0.29
CTNS-201ENST00000046640 EXOSC9Q06265 439 aaKnown RBP16.87■□□□□ 0.29
CTNS-201ENST00000046640 CD163L1Q9NR16 1453 aa16.87■□□□□ 0.29
CTNS-201ENST00000046640 MYH16Q9H6N6 1097 aa16.87■□□□□ 0.29
CTNS-201ENST00000046640 CLTCQ00610 1675 aaKnown RBP16.87■□□□□ 0.29
CTNS-201ENST00000046640 IQSEC2Q5JU85 1478 aa16.87■□□□□ 0.29
CTNS-201ENST00000046640 FAM161AQ3B820 660 aa16.87■□□□□ 0.29
CTNS-201ENST00000046640 PLEKHF1Q96S99 279 aa16.87■□□□□ 0.29
CTNS-201ENST00000046640 C8orf34Q49A92 452 aa16.86■□□□□ 0.29
CTNS-201ENST00000046640 TRIM35Q9UPQ4 493 aa16.86■□□□□ 0.29
CTNS-201ENST00000046640 A2ML1A8K2U0 1454 aa16.86■□□□□ 0.29
CTNS-201ENST00000046640 NME9Q86XW9 330 aa16.86■□□□□ 0.29
CTNS-201ENST00000046640 BRPF3Q9ULD4 1205 aa16.85■□□□□ 0.29
CTNS-201ENST00000046640 METP08581 1390 aa16.85■□□□□ 0.29
CTNS-201ENST00000046640 USP35Q9P2H5 1018 aa16.85■□□□□ 0.29
CTNS-201ENST00000046640 PCDHB15Q9Y5E8 787 aa16.85■□□□□ 0.29
CTNS-201ENST00000046640 CCDC27Q2M243 656 aa16.84■□□□□ 0.29
CTNS-201ENST00000046640 EMILIN1Q9Y6C2 1016 aa16.84■□□□□ 0.29
CTNS-201ENST00000046640 ZMYM3Q14202 1370 aa16.84■□□□□ 0.29
CTNS-201ENST00000046640 THUMPD2Q9BTF0 503 aaKnown RBP16.83■□□□□ 0.29
CTNS-201ENST00000046640 SMC4Q9NTJ3 1288 aa16.83■□□□□ 0.29
CTNS-201ENST00000046640 NINLQ9Y2I6 1382 aa16.83■□□□□ 0.29
CTNS-201ENST00000046640 CEBPAP49715 358 aaPredicted RBP16.83■□□□□ 0.28
CTNS-201ENST00000046640 POLKQ9UBT6 870 aa16.83■□□□□ 0.28
CTNS-201ENST00000046640 USP32Q8NFA0 1604 aa16.83■□□□□ 0.28
CTNS-201ENST00000046640 PRKAR2BP31323 418 aa16.83■□□□□ 0.28
CTNS-201ENST00000046640 ARHGEF40Q8TER5 1519 aa16.82■□□□□ 0.28
CTNS-201ENST00000046640 FTSJ3Q8IY81 847 aaKnown RBP16.82■□□□□ 0.28
CTNS-201ENST00000046640 RRS1Q15050 365 aaKnown RBP16.82■□□□□ 0.28
CTNS-201ENST00000046640 WASLO00401 505 aaPredicted RBP16.81■□□□□ 0.28
CTNS-201ENST00000046640 FRAT2O75474 233 aaPredicted RBP16.81■□□□□ 0.28
CTNS-201ENST00000046640 GSE1Q14687 1217 aa16.81■□□□□ 0.28
CTNS-201ENST00000046640 SSH1Q8WYL5 1049 aa16.8■□□□□ 0.28
CTNS-201ENST00000046640 PHACTR3Q96KR7 559 aa16.8■□□□□ 0.28
CTNS-201ENST00000046640 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.8■□□□□ 0.28
CTNS-201ENST00000046640 SOX12O15370 315 aa16.8■□□□□ 0.28
CTNS-201ENST00000046640 NUDT16Q96DE0 195 aaKnown RBP16.8■□□□□ 0.28
CTNS-201ENST00000046640 PPP6R1Q9UPN7 881 aa16.8■□□□□ 0.28
CTNS-201ENST00000046640 NLRP1Q9C000 1473 aa16.8■□□□□ 0.28
CTNS-201ENST00000046640 ELL2O00472 640 aaPredicted RBP16.79■□□□□ 0.28
CTNS-201ENST00000046640 ZKSCAN2Q63HK3 967 aa16.79■□□□□ 0.28
CTNS-201ENST00000046640 SLC26A8Q96RN1 970 aa16.78■□□□□ 0.28
CTNS-201ENST00000046640 PPIP5K1Q6PFW1 1433 aa16.77■□□□□ 0.28
CTNS-201ENST00000046640 ITPRIPQ8IWB1 547 aa16.77■□□□□ 0.28
CTNS-201ENST00000046640 DZIP1LQ8IYY4 767 aaKnown RBP16.77■□□□□ 0.28
CTNS-201ENST00000046640 NOB1Q9ULX3 412 aaKnown RBP16.77■□□□□ 0.28
CTNS-201ENST00000046640 COL3A1P02461 1466 aaPredicted RBP16.76■□□□□ 0.27
CTNS-201ENST00000046640 SEC24BO95487 1268 aa16.76■□□□□ 0.27
CTNS-201ENST00000046640 TRIM27P14373 513 aa16.76■□□□□ 0.27
CTNS-201ENST00000046640 MVPQ14764 893 aaKnown RBP16.75■□□□□ 0.27
CTNS-201ENST00000046640 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.75■□□□□ 0.27
CTNS-201ENST00000046640 AGLP35573 1532 aa16.75■□□□□ 0.27
CTNS-201ENST00000046640 RSPH6AQ9H0K4 717 aa16.75■□□□□ 0.27
CTNS-201ENST00000046640 FCHSD2O94868 740 aa16.74■□□□□ 0.27
CTNS-201ENST00000046640 PDZRN3Q9UPQ7 1066 aa16.74■□□□□ 0.27
CTNS-201ENST00000046640 CCDC61Q9Y6R9 512 aa16.74■□□□□ 0.27
CTNS-201ENST00000046640 SLKQ9H2G2 1235 aaPredicted RBP16.74■□□□□ 0.27
CTNS-201ENST00000046640 SPATA31D1Q6ZQQ2 1576 aa16.73■□□□□ 0.27
CTNS-201ENST00000046640 COG3Q96JB2 828 aa16.73■□□□□ 0.27
CTNS-201ENST00000046640 LTKP29376 864 aa16.73■□□□□ 0.27
CTNS-201ENST00000046640 PMFBP1Q8TBY8 1022 aa16.73■□□□□ 0.27
CTNS-201ENST00000046640 PNPLA6Q8IY17 1366 aa16.72■□□□□ 0.27
CTNS-201ENST00000046640 TNRQ92752 1358 aa16.72■□□□□ 0.27
CTNS-201ENST00000046640 PRR36Q9H6K5 1346 aa16.72■□□□□ 0.27
CTNS-201ENST00000046640 FAM83GA6ND36 823 aa16.72■□□□□ 0.27
CTNS-201ENST00000046640 DCTN1Q14203 1278 aa16.72■□□□□ 0.27
CTNS-201ENST00000046640 TMEM57Q8N5G2 664 aa16.71■□□□□ 0.27
CTNS-201ENST00000046640 ARXQ96QS3 562 aa16.71■□□□□ 0.27
CTNS-201ENST00000046640 HDGFP51858 240 aaKnown RBP16.71■□□□□ 0.26
CTNS-201ENST00000046640 ATF7IPQ6VMQ6 1270 aa16.71■□□□□ 0.26
CTNS-201ENST00000046640 PNNQ9H307 717 aaKnown RBP16.71■□□□□ 0.26
CTNS-201ENST00000046640 RWDD1Q9H446 243 aaPredicted RBP16.71■□□□□ 0.26
CTNS-201ENST00000046640 TSPYL6Q8N831 410 aa16.7■□□□□ 0.26
CTNS-201ENST00000046640 SPRYD3Q8NCJ5 442 aa16.7■□□□□ 0.26
CTNS-201ENST00000046640 ADGRB2O60241 1585 aa16.7■□□□□ 0.26
CTNS-201ENST00000046640 IL13P35225 146 aa16.69■□□□□ 0.26
CTNS-201ENST00000046640 ROBO2Q9HCK4 1378 aa16.69■□□□□ 0.26
CTNS-201ENST00000046640 MED14O60244 1454 aa16.68■□□□□ 0.26
CTNS-201ENST00000046640 NFE2L2Q16236 605 aa16.68■□□□□ 0.26
CTNS-201ENST00000046640 AEBP1Q8IUX7 1158 aa16.67■□□□□ 0.26
CTNS-201ENST00000046640 LRRC7Q96NW7 1537 aa16.67■□□□□ 0.26
CTNS-201ENST00000046640 REREQ9P2R6 1566 aa16.67■□□□□ 0.26
CTNS-201ENST00000046640 TMEM2Q9UHN6 1383 aa16.67■□□□□ 0.26
CTNS-201ENST00000046640 CPS1P31327 1500 aa16.67■□□□□ 0.26
CTNS-201ENST00000046640 ATP7BP35670 1465 aa16.66■□□□□ 0.26
CTNS-201ENST00000046640 CPSF1Q10570 1443 aaKnown RBP16.66■□□□□ 0.26
CTNS-201ENST00000046640 EDC4Q6P2E9 1401 aaKnown RBP16.66■□□□□ 0.26
CTNS-201ENST00000046640 NRXN3Q9Y4C0 1643 aa16.66■□□□□ 0.26
CTNS-201ENST00000046640 MAP2P11137 1827 aaKnown RBP16.66■□□□□ 0.26
CTNS-201ENST00000046640 NCBP3Q53F19 620 aaKnown RBP16.65■□□□□ 0.26
CTNS-201ENST00000046640 C1orf115Q9H7X2 142 aa16.65■□□□□ 0.26
CTNS-201ENST00000046640 DLC1Q96QB1 1528 aa16.65■□□□□ 0.26
CTNS-201ENST00000046640 ACEP12821 1306 aa16.65■□□□□ 0.26
CTNS-201ENST00000046640 CT47B1P0C2W7 299 aaPredicted RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 132.1 ms