RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CYP11B2P19099 503 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 NFKB1P19838 968 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 PSMC5P62195 406 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 CYP51A1Q16850 503 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 EMC1Q8N766 993 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ITFG1Q8TB96 612 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 OXER1Q8TDS5 423 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 CCDC32Q9BV29 185 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 NIF3L1Q9GZT8 377 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 UNC93B1Q9H1C4 597 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 KAT8Q9H7Z6 458 aaKnown RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 COMMD9Q9P000 198 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 PCDHGA4Q9Y5G9 962 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 C10orf71Q711Q0 1435 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 MYO1GB0I1T2 1018 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 PLEKHA8P1O95397 391 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 LINGO3P0C6S8 592 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 GARTP22102 1010 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 RXRBP28702 533 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 CDH18Q13634 790 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 C12orf66Q96MD2 445 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 CADM1Q9BY67 442 aaKnown RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 PAK6Q9NQU5 681 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 TOPORSQ9NS56 1045 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 INTS10Q9NVR2 710 aaKnown RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 AASSQ9UDR5 926 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 CRB1P82279 1406 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 CPS1P31327 1500 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 PBRM1Q86U86 1689 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 PIPSLA2A3N6 862 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 APOC4-APOC2K7ER74 178 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 KMOO15229 486 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 APOC2P02655 101 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 MLNP12872 115 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 CD44P16070 742 aaKnown RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 SLC7A1P30825 629 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 RCVRNP35243 200 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 SCNN1BP51168 640 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 NFIL3Q16649 462 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 TIGD7Q6NT04 549 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 TFB1MQ8WVM0 346 aaKnown RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 EEF2KMTQ96G04 330 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 PIGSQ96S52 555 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 WRNIP1Q96S55 665 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 FICDQ9BVA6 458 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 GON7Q9BXV9 100 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ENTPD7Q9NQZ7 604 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ABCB10Q9NRK6 738 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 HSPBP1Q9NZL4 362 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 MAN2B2Q9Y2E5 1009 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 DYRK3O43781 588 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 SEMA3DO95025 777 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ADAMTS2O95450 1211 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 RBL1P28749 1068 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 NMT1P30419 496 aaKnown RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 CRHR1P34998 444 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 DLG1Q12959 904 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ZC3H12AQ5D1E8 599 aaKnown RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 TTC7BQ86TV6 843 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF276Q8N554 614 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ELMO2Q96JJ3 720 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 TTYH1Q9H313 450 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 RPF1Q9H9Y2 349 aaKnown RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 TBC1D14Q9P2M4 693 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF451Q9Y4E5 1061 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 CNTNAP5Q8WYK1 1306 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 CST8O60676 142 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 IMPDH1P20839 514 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 KLRC3Q07444 240 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ITKQ08881 620 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 DGKKQ5KSL6 1271 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 EIF5AL1Q6IS14 154 aaKnown RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 FAM122CQ6P4D5 195 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 SYTL1Q8IYJ3 562 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 SNX27Q96L92 541 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 EHD4Q9H223 541 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 EPB41L4BQ9H329 900 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 CYP4F12Q9HCS2 524 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 INTS13Q9NVM9 706 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 MTA2O94776 668 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 TSPAN19P0C672 248 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF24P17028 368 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 RPS8P62241 208 aaKnown RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 CLEC16AQ2KHT3 1053 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 PPM1LQ5SGD2 360 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ERICH5Q6P6B1 374 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 WDR59Q6PJI9 974 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 OR2T34Q8NGX1 318 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 OR2T3Q8NH03 318 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 PGBD4Q96DM1 585 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 HAPLN3Q96S86 360 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ANKEF1Q9NU02 776 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 LRRIQ1Q96JM4 1722 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 GAKO14976 1311 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 OR14I1A6ND48 311 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ZW10O43264 779 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 UGT2B4P06133 528 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 GPD1P21695 349 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 GRIA2P42262 883 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 MAPK12P53778 367 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms