RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 USP3Q9Y6I4 520 aa16.99■□□□□ 0.31
CLN3-264ENST00000637985 SPTAN1Q13813 2472 aaKnown RBP16.99■□□□□ 0.31
CLN3-264ENST00000637985 MID1O15344 667 aa16.98■□□□□ 0.31
CLN3-264ENST00000637985 SUV39H1O43463 412 aa16.98■□□□□ 0.31
CLN3-264ENST00000637985 SDC3O75056 442 aa16.98■□□□□ 0.31
CLN3-264ENST00000637985 CLSTN1O94985 981 aa16.98■□□□□ 0.31
CLN3-264ENST00000637985 PABPC1P11940 636 aaKnown RBP16.98■□□□□ 0.31
CLN3-264ENST00000637985 GP1BBP13224 206 aa16.98■□□□□ 0.31
CLN3-264ENST00000637985 NR2F2P24468 414 aa16.98■□□□□ 0.31
CLN3-264ENST00000637985 ADORA2BP29275 332 aa16.98■□□□□ 0.31
CLN3-264ENST00000637985 NDST1P52848 882 aa16.98■□□□□ 0.31
CLN3-264ENST00000637985 DAB2P98082 770 aa16.98■□□□□ 0.31
CLN3-264ENST00000637985 CST6Q15828 149 aa16.98■□□□□ 0.31
CLN3-264ENST00000637985 ARL13BQ3SXY8 428 aa16.98■□□□□ 0.31
CLN3-264ENST00000637985 LINC00303Q3SY05 128 aa16.98■□□□□ 0.31
CLN3-264ENST00000637985 XKR5Q6UX68 686 aa16.98■□□□□ 0.31
CLN3-264ENST00000637985 INTS8Q75QN2 995 aaKnown RBP16.98■□□□□ 0.31
CLN3-264ENST00000637985 SV2AQ7L0J3 742 aa16.98■□□□□ 0.31
CLN3-264ENST00000637985 ELMO3Q96BJ8 720 aa16.98■□□□□ 0.31
CLN3-264ENST00000637985 CCDC97Q96F63 343 aaPredicted RBP16.98■□□□□ 0.31
CLN3-264ENST00000637985 SLC46A1Q96NT5 459 aa16.98■□□□□ 0.31
CLN3-264ENST00000637985 MARCH2Q9P0N8 246 aa16.98■□□□□ 0.31
CLN3-264ENST00000637985 NOTCH2Q04721 2471 aa16.98■□□□□ 0.31
CLN3-264ENST00000637985 RELNP78509 3460 aa16.97■□□□□ 0.31
CLN3-264ENST00000637985 LATO43561 262 aa16.97■□□□□ 0.31
CLN3-264ENST00000637985 LZTS3O60299 673 aaPredicted RBP16.97■□□□□ 0.31
CLN3-264ENST00000637985 RNASEH2AO75792 299 aaKnown RBP16.97■□□□□ 0.31
CLN3-264ENST00000637985 CKMT1AP12532 417 aa16.97■□□□□ 0.31
CLN3-264ENST00000637985 VAMP7P51809 220 aa16.97■□□□□ 0.31
CLN3-264ENST00000637985 NFKB2Q00653 900 aa16.97■□□□□ 0.31
CLN3-264ENST00000637985 ADAM9Q13443 819 aa16.97■□□□□ 0.31
CLN3-264ENST00000637985 NAPEPLDQ6IQ20 393 aa16.97■□□□□ 0.31
CLN3-264ENST00000637985 IQCHQ86VS3 1027 aa16.97■□□□□ 0.31
CLN3-264ENST00000637985 UNC93AQ86WB7 457 aa16.97■□□□□ 0.31
CLN3-264ENST00000637985 MYO19Q96H55 970 aa16.97■□□□□ 0.31
CLN3-264ENST00000637985 OMDQ99983 421 aa16.97■□□□□ 0.31
CLN3-264ENST00000637985 MAPK8IP1Q9UQF2 711 aa16.97■□□□□ 0.31
CLN3-264ENST00000637985 A0A1B0GVM2 712 aa16.96■□□□□ 0.31
CLN3-264ENST00000637985 A0A1W2PNU3 283 aaPredicted RBP16.96■□□□□ 0.31
CLN3-264ENST00000637985 SLC12A8A0AV02 714 aa16.96■□□□□ 0.31
CLN3-264ENST00000637985 GOLGA6L4A6NEF3 574 aa16.96■□□□□ 0.31
CLN3-264ENST00000637985 RNASEH1O60930 286 aaKnown RBP16.96■□□□□ 0.31
CLN3-264ENST00000637985 SIN3BO75182 1162 aa16.96■□□□□ 0.31
CLN3-264ENST00000637985 ASS1P00966 412 aaKnown RBP16.96■□□□□ 0.31
CLN3-264ENST00000637985 AFPP02771 609 aaKnown RBP16.96■□□□□ 0.31
CLN3-264ENST00000637985 KRT13P13646 458 aa16.96■□□□□ 0.31
CLN3-264ENST00000637985 ITGB6P18564 788 aa16.96■□□□□ 0.31
CLN3-264ENST00000637985 PSMC2P35998 433 aaKnown RBP16.96■□□□□ 0.31
CLN3-264ENST00000637985 ADPRHP54922 357 aa16.96■□□□□ 0.31
CLN3-264ENST00000637985 OVGP1Q12889 678 aa16.96■□□□□ 0.31
CLN3-264ENST00000637985 TRIP4Q15650 581 aaPredicted RBP16.96■□□□□ 0.31
CLN3-264ENST00000637985 HNRNPA1L2Q32P51 320 aaKnown RBP16.96■□□□□ 0.31
CLN3-264ENST00000637985 C1orf220Q5T0J3 134 aa16.96■□□□□ 0.31
CLN3-264ENST00000637985 FAM186BQ8IYM0 893 aa16.96■□□□□ 0.31
CLN3-264ENST00000637985 FMR1NBQ8N0W7 255 aaPredicted RBP16.96■□□□□ 0.31
CLN3-264ENST00000637985 OR4C6Q8NH72 309 aa16.96■□□□□ 0.31
CLN3-264ENST00000637985 PLD4Q96BZ4 506 aa16.96■□□□□ 0.31
CLN3-264ENST00000637985 RMND1Q9NWS8 449 aa16.96■□□□□ 0.31
CLN3-264ENST00000637985 STOML2Q9UJZ1 356 aa16.96■□□□□ 0.31
CLN3-264ENST00000637985 STRIP2Q9ULQ0 834 aa16.96■□□□□ 0.31
CLN3-264ENST00000637985 SATB2Q9UPW6 733 aa16.96■□□□□ 0.31
CLN3-264ENST00000637985 MAGEC1O60732 1142 aa16.95■□□□□ 0.3
CLN3-264ENST00000637985 HLA-DRAP01903 254 aa16.95■□□□□ 0.3
CLN3-264ENST00000637985 GP1BAP07359 652 aa16.95■□□□□ 0.3
CLN3-264ENST00000637985 POLR2EP19388 210 aaKnown RBP16.95■□□□□ 0.3
CLN3-264ENST00000637985 RBMS1P29558 406 aaKnown RBP16.95■□□□□ 0.3
CLN3-264ENST00000637985 SLC8A1P32418 973 aa16.95■□□□□ 0.3
CLN3-264ENST00000637985 PIK3CAP42336 1068 aa16.95■□□□□ 0.3
CLN3-264ENST00000637985 ZNF445P59923 1031 aa16.95■□□□□ 0.3
CLN3-264ENST00000637985 MCCD1P59942 119 aaPredicted RBP16.95■□□□□ 0.3
CLN3-264ENST00000637985 UBAP2LQ14157 1087 aaKnown RBP16.95■□□□□ 0.3
CLN3-264ENST00000637985 ARID5BQ14865 1188 aa16.95■□□□□ 0.3
CLN3-264ENST00000637985 ISXQ2M1V0 245 aa16.95■□□□□ 0.3
CLN3-264ENST00000637985 EDRF1Q3B7T1 1238 aa16.95■□□□□ 0.3
CLN3-264ENST00000637985 ZCWPW2Q504Y3 356 aa16.95■□□□□ 0.3
CLN3-264ENST00000637985 C9orf64Q5T6V5 341 aa16.95■□□□□ 0.3
CLN3-264ENST00000637985 MMAAQ8IVH4 418 aaKnown RBP16.95■□□□□ 0.3
CLN3-264ENST00000637985 TMA16Q96EY4 203 aaKnown RBP16.95■□□□□ 0.3
CLN3-264ENST00000637985 CYFIP2Q96F07 1278 aa16.95■□□□□ 0.3
CLN3-264ENST00000637985 IMPG2Q9BZV3 1241 aa16.95■□□□□ 0.3
CLN3-264ENST00000637985 ARHGAP20Q9P2F6 1191 aa16.95■□□□□ 0.3
CLN3-264ENST00000637985 TJP2Q9UDY2 1190 aa16.95■□□□□ 0.3
CLN3-264ENST00000637985 USP9YO00507 2555 aaPredicted RBP16.94■□□□□ 0.3
CLN3-264ENST00000637985 TEP1Q99973 2627 aaKnown RBP16.94■□□□□ 0.3
CLN3-264ENST00000637985 CDRT15L2A8MXV6 281 aa16.94■□□□□ 0.3
CLN3-264ENST00000637985 EFSO43281 561 aa16.94■□□□□ 0.3
CLN3-264ENST00000637985 GIMD1P0DJR0 217 aa16.94■□□□□ 0.3
CLN3-264ENST00000637985 GOT1P17174 413 aa16.94■□□□□ 0.3
CLN3-264ENST00000637985 TRIM21P19474 475 aaKnown RBP16.94■□□□□ 0.3
CLN3-264ENST00000637985 DGKAP23743 735 aa16.94■□□□□ 0.3
CLN3-264ENST00000637985 CD70P32970 193 aa16.94■□□□□ 0.3
CLN3-264ENST00000637985 PPP2CBP62714 309 aa16.94■□□□□ 0.3
CLN3-264ENST00000637985 PPP2CAP67775 309 aa16.94■□□□□ 0.3
CLN3-264ENST00000637985 CLN3Q13286 438 aa16.94■□□□□ 0.3
CLN3-264ENST00000637985 SGO2Q562F6 1265 aa16.94■□□□□ 0.3
CLN3-264ENST00000637985 C3orf38Q5JPI3 329 aa16.94■□□□□ 0.3
CLN3-264ENST00000637985 AADATQ8N5Z0 425 aa16.94■□□□□ 0.3
CLN3-264ENST00000637985 OR14C36Q8NHC7 312 aa16.94■□□□□ 0.3
CLN3-264ENST00000637985 WFDC5Q8TCV5 224 aa16.94■□□□□ 0.3
CLN3-264ENST00000637985 PRR11Q96HE9 360 aaPredicted RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms