RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	CALCOCO2	Q13137	446 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	TEAD2	Q15562	447 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	TRIP13	Q15645	432 aa	Predicted RBP	12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	FAM133B	Q5BKY9	247 aa	Known RBP	12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	RABGAP1L	Q5R372	815 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	FBXO38	Q6PIJ6	1188 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	HTR3D	Q70Z44	454 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	NLRP14	Q86W24	1093 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	LRRC49	Q8IUZ0	686 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	CMTM8	Q8IZV2	173 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	UMODL1-AS1	Q8N2C9	162 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	FAM71D	Q8N9W8	422 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	ADAMTS19	Q8TE59	1207 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	IGSF8	Q969P0	613 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	WBP2	Q969T9	261 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	RPRD1A	Q96P16	312 aa	Predicted RBP	12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	PRDM12	Q9H4Q4	367 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	ZNF576	Q9H609	170 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	NSUN3	Q9H649	340 aa	Known RBP	12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	IGFLR1	Q9H665	355 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	C10orf88	Q9H8K7	445 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	SMPD4	Q9NXE4	827 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	MPP6	Q9NZW5	540 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	NFU1	Q9UMS0	254 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823	ARHGAP26	Q9UNA1	814 aa		12.1	□□□□□ -0.47
CLN6-223	ENST00000637823		A0A1W2PPC1	479 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	C5orf60	A6NFR6	353 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	NRG2	O14511	850 aa	Predicted RBP	12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	KCNN4	O15554	427 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	MTSS1	O43312	755 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	GREM1	O60565	184 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	GCAT	O75600	419 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	STK10	O94804	968 aa	Known RBP	12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	MAP3K6	O95382	1288 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	ETS1	P14921	441 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	SLC6A4	P31645	630 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	RPL22	P35268	128 aa	Known RBP	12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	MAPKAPK2	P49137	400 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	CLCN6	P51797	869 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	NTHL1	P78549	312 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	RBM10	P98175	930 aa	Known RBP	12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	PPID	Q08752	370 aa	Known RBP	12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	AP1B1	Q10567	949 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	HLTF	Q14527	1009 aa	Known RBP eCLIP	12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	PRKD1	Q15139	912 aa	Predicted RBP	12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	SLC5A9	Q2M3M2	681 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	P3H1	Q32P28	736 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	STXBP5	Q5T5C0	1151 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	AFMID	Q63HM1	303 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	HEATR6	Q6AI08	1181 aa	Known RBP	12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	RFWD3	Q6PCD5	774 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823		Q6ZNB5	142 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	B4GALNT4	Q76KP1	1039 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	PCGF5	Q86SE9	256 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	NPW	Q8N729	165 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	EFHB	Q8N7U6	833 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	C12orf76	Q8N812	135 aa	Predicted RBP	12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	GLIS1	Q8NBF1	620 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	CCNY	Q8ND76	341 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	VN1R2	Q8NFZ6	395 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	HTR3C	Q8WXA8	447 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	ART4	Q93070	314 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	HDAC11	Q96DB2	347 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	TSGA13	Q96PP4	275 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	LGMN	Q99538	433 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	ARFGAP3	Q9NP61	516 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	GRHL1	Q9NZI5	618 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	ANAPC5	Q9UJX4	755 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	MRPS23	Q9Y3D9	190 aa	Known RBP	12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	SH3BP1	Q9Y3L3	701 aa		12.09	□□□□□ -0.47
CLN6-223	ENST00000637823	MYOF	Q9NZM1	2061 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	E2F8	A0AVK6	867 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	LEFTY2	O00292	366 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	CLDN11	O75508	207 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	CNTN5	O94779	1100 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	SEC31A	O94979	1220 aa	Known RBP	12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	ZSCAN5DP	P0CG00	497 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	MYBL2	P10244	700 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	CCNC	P24863	283 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	WEE1	P30291	646 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	AVPR1A	P37288	418 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	GARS	P41250	739 aa	Known RBP	12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	VPS41	P49754	854 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	GDF10	P55107	478 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	CDH4	P55283	916 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	ZXDB	P98169	803 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	HYAL1	Q12794	435 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	GPS1	Q13098	491 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	LRIT3	Q3SXY7	679 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	ALF	Q53S48	1182 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	TCEAL5	Q5H9L2	206 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	TTC39B	Q5VTQ0	682 aa	Predicted RBP	12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	EMB	Q6PCB8	327 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	TMC5	Q6UXY8	1006 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	PRUNE1	Q86TP1	453 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	ARHGAP12	Q8IWW6	846 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	FAM217A	Q8IXS0	508 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	CCDC33	Q8N5R6	958 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	AEN	Q8WTP8	325 aa	Known RBP	12.08	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms