RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 CDC25BP30305 580 aa18.84■□□□□ 0.61
CLN3-259ENST00000637551 TIE1P35590 1138 aa18.84■□□□□ 0.61
CLN3-259ENST00000637551 PUM1Q14671 1186 aaKnown RBP eCLIP18.84■□□□□ 0.61
CLN3-259ENST00000637551 STARD3Q14849 445 aa18.84■□□□□ 0.61
CLN3-259ENST00000637551 MANEALQ5VSG8 457 aa18.84■□□□□ 0.61
CLN3-259ENST00000637551 FAM131BQ86XD5 332 aa18.84■□□□□ 0.61
CLN3-259ENST00000637551 GAS2L3Q86XJ1 694 aa18.84■□□□□ 0.61
CLN3-259ENST00000637551 CHPFQ8IZ52 775 aa18.84■□□□□ 0.61
CLN3-259ENST00000637551 NIPA2Q8N8Q9 360 aa18.84■□□□□ 0.61
CLN3-259ENST00000637551 TXNDC5Q8NBS9 432 aaKnown RBP18.84■□□□□ 0.61
CLN3-259ENST00000637551 CNTNAP3BQ96NU0 1288 aa18.84■□□□□ 0.61
CLN3-259ENST00000637551 CNTNAP3Q9BZ76 1288 aa18.84■□□□□ 0.61
CLN3-259ENST00000637551 EPC1Q9H2F5 836 aa18.84■□□□□ 0.61
CLN3-259ENST00000637551 DEF6Q9H4E7 631 aa18.84■□□□□ 0.61
CLN3-259ENST00000637551 UVRAGQ9P2Y5 699 aa18.84■□□□□ 0.61
CLN3-259ENST00000637551 INTUQ9ULD6 942 aa18.84■□□□□ 0.61
CLN3-259ENST00000637551 CLEC4EQ9ULY5 219 aa18.84■□□□□ 0.61
CLN3-259ENST00000637551 PLA2G4CQ9UP65 541 aa18.84■□□□□ 0.61
CLN3-259ENST00000637551 ZFHX4Q86UP3 3567 aa18.83■□□□□ 0.61
CLN3-259ENST00000637551 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.83■□□□□ 0.6
CLN3-259ENST00000637551 H0Y626 953 aa18.83■□□□□ 0.6
CLN3-259ENST00000637551 I6L893 689 aaPredicted RBP18.83■□□□□ 0.6
CLN3-259ENST00000637551 TRIM24O15164 1050 aa18.83■□□□□ 0.6
CLN3-259ENST00000637551 ZBTB24O43167 697 aaPredicted RBP18.83■□□□□ 0.6
CLN3-259ENST00000637551 CCP110O43303 1012 aa18.83■□□□□ 0.6
CLN3-259ENST00000637551 RNF8O76064 485 aa18.83■□□□□ 0.6
CLN3-259ENST00000637551 SRPRAP08240 638 aaKnown RBP18.83■□□□□ 0.6
CLN3-259ENST00000637551 PLEKP08567 350 aaPredicted RBP18.83■□□□□ 0.6
CLN3-259ENST00000637551 POLR2EP19388 210 aaKnown RBP18.83■□□□□ 0.6
CLN3-259ENST00000637551 HOXC13P31276 330 aa18.83■□□□□ 0.6
CLN3-259ENST00000637551 L1CAMP32004 1257 aa18.83■□□□□ 0.6
CLN3-259ENST00000637551 PCK1P35558 622 aa18.83■□□□□ 0.6
CLN3-259ENST00000637551 ETFBP38117 255 aa18.83■□□□□ 0.6
CLN3-259ENST00000637551 EIF4A3P38919 411 aaKnown RBP18.83■□□□□ 0.6
CLN3-259ENST00000637551 SEC13P55735 322 aa18.83■□□□□ 0.6
CLN3-259ENST00000637551 ZNF177Q13360 481 aaPredicted RBP18.83■□□□□ 0.6
CLN3-259ENST00000637551 BYSLQ13895 437 aaKnown RBP18.83■□□□□ 0.6
CLN3-259ENST00000637551 PIGHQ14442 188 aaPredicted RBP18.83■□□□□ 0.6
CLN3-259ENST00000637551 C15orf59Q2T9L4 293 aaPredicted RBP18.83■□□□□ 0.6
CLN3-259ENST00000637551 PLEKHG6Q3KR16 790 aa18.83■□□□□ 0.6
CLN3-259ENST00000637551 EFHC2Q5JST6 749 aa18.83■□□□□ 0.6
CLN3-259ENST00000637551 EGFLAMQ63HQ2 1017 aa18.83■□□□□ 0.6
CLN3-259ENST00000637551 SLFN11Q7Z7L1 901 aa18.83■□□□□ 0.6
CLN3-259ENST00000637551 METTL3Q86U44 580 aaKnown RBP18.83■□□□□ 0.6
CLN3-259ENST00000637551 CCDC42Q96M95 316 aa18.83■□□□□ 0.6
CLN3-259ENST00000637551 CD248Q9HCU0 757 aa18.83■□□□□ 0.6
CLN3-259ENST00000637551 OR12D3Q9UGF7 316 aa18.83■□□□□ 0.6
CLN3-259ENST00000637551 HCN2Q9UL51 889 aa18.83■□□□□ 0.6
CLN3-259ENST00000637551 VANGL2Q9ULK5 521 aa18.83■□□□□ 0.6
CLN3-259ENST00000637551 ACACBO00763 2458 aa18.83■□□□□ 0.6
CLN3-259ENST00000637551 EML5Q05BV3 1969 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 TMCO5BA8MYB1 307 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 E9PAM4 449 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 SGK1O00141 431 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 AP5Z1O43299 807 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 LMNAP02545 664 aaKnown RBP18.82■□□□□ 0.6
CLN3-259ENST00000637551 HOXB2P14652 356 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 FECHP22830 423 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 MAPKAPK2P49137 400 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 LMAN2Q12907 356 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 CDO1Q16878 200 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 CCDC122Q5T0U0 273 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 C6orf118Q5T5N4 469 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 TMEM215Q68D42 235 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 MBLAC2Q68D91 279 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 CXorf57Q6NSI4 855 aaKnown RBP18.82■□□□□ 0.6
CLN3-259ENST00000637551 SFTPA1Q8IWL2 248 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 KIAA2013Q8IYS2 634 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 CCDC170Q8IYT3 715 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 CARNMT1Q8N4J0 409 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 TC2NQ8N9U0 490 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 PANX2Q96RD6 677 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 ZYG11BQ9C0D3 744 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 TMEM245Q9H330 911 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 ANLNQ9NQW6 1124 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 IMPACTQ9P2X3 320 aa18.82■□□□□ 0.6
CLN3-259ENST00000637551 ILVBLA1L0T0 632 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 AXIN1O15169 862 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 AKR1B10O60218 316 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 H2AFZP0C0S5 128 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 PSMA2P25787 234 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 CD70P32970 193 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 ZNF234Q14588 700 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 TCEAL1Q15170 157 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 FUT11Q495W5 492 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 PITRM1Q5JRX3 1037 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 H2AFVQ71UI9 128 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.81■□□□□ 0.6
CLN3-259ENST00000637551 WFDC5Q8TCV5 224 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 CTNNBL1Q8WYA6 563 aaPredicted RBP18.81■□□□□ 0.6
CLN3-259ENST00000637551 IGSF8Q969P0 613 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 MYEOVQ96EZ4 313 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 CIPCQ9C0C6 399 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 SIK2Q9H0K1 926 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 NHEJ1Q9H9Q4 299 aaPredicted RBP18.81■□□□□ 0.6
CLN3-259ENST00000637551 C2orf42Q9NWW7 574 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 DLL3Q9NYJ7 618 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 STIM2Q9P246 746 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 ZNF212Q9UDV6 495 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 IP6K2Q9UHH9 426 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms