RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 DFFAO00273 331 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 CKMP06732 381 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 PTPN2P17706 415 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 CHKAP35790 457 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 PDK1Q15118 436 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 MAP9Q49MG5 647 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 ANKRD22Q5VYY1 191 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 LRRC31Q6UY01 552 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 RTL3Q8N8U3 475 aaKnown RBP20.66■□□□□ 0.9
CLN3-250ENST00000636839 HTR3CQ8WXA8 447 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 PLD4Q96BZ4 506 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 ZYG11BQ9C0D3 744 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 IGFLR1Q9H665 355 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 CATSPERBQ9H7T0 1116 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 PRDM16Q9HAZ2 1276 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 XIRP2A4UGR9 3374 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.66■□□□□ 0.9
CLN3-250ENST00000636839 TCRBV7S3A2A0A539 114 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 TSPAN3O60637 253 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 ITIH2P19823 946 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 RPS24P62847 133 aaKnown RBP20.66■□□□□ 0.9
CLN3-250ENST00000636839 GALNT2Q10471 571 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 CALCOCO2Q13137 446 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 UBAP2Q5T6F2 1119 aaKnown RBP20.66■□□□□ 0.9
CLN3-250ENST00000636839 RHBDF2Q6PJF5 856 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 RTP4Q96DX8 246 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 NOTCH4Q99466 2003 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 FMO2Q99518 471 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 ZNF212Q9UDV6 495 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 CDH22Q9UJ99 828 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 CCL26Q9Y258 94 aa20.66■□□□□ 0.9
CLN3-250ENST00000636839 SPDYE4A6NLX3 237 aa20.65■□□□□ 0.9
CLN3-250ENST00000636839 DRGXA6NNA5 263 aa20.65■□□□□ 0.9
CLN3-250ENST00000636839 DNALI1O14645 258 aaPredicted RBP20.65■□□□□ 0.9
CLN3-250ENST00000636839 FGF10O15520 208 aaPredicted RBP20.65■□□□□ 0.9
CLN3-250ENST00000636839 CDC25CP30307 473 aa20.65■□□□□ 0.9
CLN3-250ENST00000636839 EPHA5P54756 1037 aa20.65■□□□□ 0.9
CLN3-250ENST00000636839 CASP8Q14790 479 aa20.65■□□□□ 0.9
CLN3-250ENST00000636839 DUSP6Q16828 381 aa20.65■□□□□ 0.9
CLN3-250ENST00000636839 HEATR6Q6AI08 1181 aaKnown RBP20.65■□□□□ 0.9
CLN3-250ENST00000636839 EMBQ6PCB8 327 aa20.65■□□□□ 0.9
CLN3-250ENST00000636839 TMC5Q6UXY8 1006 aa20.65■□□□□ 0.9
CLN3-250ENST00000636839 PDZD4Q76G19 769 aaPredicted RBP20.65■□□□□ 0.9
CLN3-250ENST00000636839 EIF1ADQ8N9N8 165 aaKnown RBP20.65■□□□□ 0.9
CLN3-250ENST00000636839 CAVIN3Q969G5 261 aa20.65■□□□□ 0.9
CLN3-250ENST00000636839 TIFAQ96CG3 184 aa20.65■□□□□ 0.9
CLN3-250ENST00000636839 PRICKLE1Q96MT3 831 aaPredicted RBP20.65■□□□□ 0.9
CLN3-250ENST00000636839 PPARGC1AQ9UBK2 798 aaKnown RBP20.65■□□□□ 0.9
CLN3-250ENST00000636839 GARSP41250 739 aaKnown RBP20.65■□□□□ 0.9
CLN3-250ENST00000636839 SLC11A2P49281 568 aa20.65■□□□□ 0.9
CLN3-250ENST00000636839 WASHC5Q12768 1159 aa20.65■□□□□ 0.9
CLN3-250ENST00000636839 MTM1Q13496 603 aa20.65■□□□□ 0.9
CLN3-250ENST00000636839 GPR158Q5T848 1215 aa20.65■□□□□ 0.9
CLN3-250ENST00000636839 RNASEH2BQ5TBB1 312 aaKnown RBP20.65■□□□□ 0.9
CLN3-250ENST00000636839 HIBCHQ6NVY1 386 aaPredicted RBP20.65■□□□□ 0.9
CLN3-250ENST00000636839 BZW1Q7L1Q6 419 aaKnown RBP20.65■□□□□ 0.9
CLN3-250ENST00000636839 CPT1BQ92523 772 aa20.65■□□□□ 0.9
CLN3-250ENST00000636839 ZSWIM3Q96MP5 696 aa20.65■□□□□ 0.9
CLN3-250ENST00000636839 APOL5Q9BWW9 433 aa20.65■□□□□ 0.9
CLN3-250ENST00000636839 PRKD2Q9BZL6 878 aa20.65■□□□□ 0.9
CLN3-250ENST00000636839 TMEM51Q9NW97 253 aa20.65■□□□□ 0.9
CLN3-250ENST00000636839 TPX2Q9ULW0 747 aaKnown RBP20.65■□□□□ 0.9
CLN3-250ENST00000636839 ZFP37Q9Y6Q3 630 aaPredicted RBP20.65■□□□□ 0.9
CLN3-250ENST00000636839 GOLGA8MH3BSY2 632 aa20.64■□□□□ 0.89
CLN3-250ENST00000636839 METTL18O95568 372 aa20.64■□□□□ 0.89
CLN3-250ENST00000636839 RHOQP17081 205 aa20.64■□□□□ 0.89
CLN3-250ENST00000636839 BMP8BP34820 402 aa20.64■□□□□ 0.89
CLN3-250ENST00000636839 HTR7P34969 479 aa20.64■□□□□ 0.89
CLN3-250ENST00000636839 CBX2Q14781 532 aaPredicted RBP20.64■□□□□ 0.89
CLN3-250ENST00000636839 RIN3Q8TB24 985 aa20.64■□□□□ 0.89
CLN3-250ENST00000636839 ING5Q8WYH8 240 aa20.64■□□□□ 0.89
CLN3-250ENST00000636839 DENND4CQ5VZ89 1909 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 HACD1B0YJ81 288 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 F5H5T6 163 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 RNF103O00237 685 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 PPP1R12AO14974 1030 aaPredicted RBP20.63■□□□□ 0.89
CLN3-250ENST00000636839 HNRNPA1P09651 372 aaKnown RBP eCLIP20.63■□□□□ 0.89
CLN3-250ENST00000636839 HOXA9P31269 272 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 SERPINB6P35237 376 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 BASP1P80723 227 aaKnown RBP20.63■□□□□ 0.89
CLN3-250ENST00000636839 DHX9Q08211 1270 aaKnown RBP20.63■□□□□ 0.89
CLN3-250ENST00000636839 PPIDQ08752 370 aaKnown RBP20.63■□□□□ 0.89
CLN3-250ENST00000636839 ADGRF1Q5T601 910 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 AFMIDQ63HM1 303 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 CHRDL2Q6WN34 429 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 CCDC25Q86WR0 208 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 OR52K2Q8NGK3 314 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 GCNAQ96QF7 691 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 CFAP97Q9P2B7 532 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 TRAV19A0A0A6YYK7 116 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 CFAP69A5D8W1 941 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 WASH4PA8MWX3 477 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 PAPOLAP51003 745 aaKnown RBP20.63■□□□□ 0.89
CLN3-250ENST00000636839 KCNC3Q14003 757 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 PRSS36Q5K4E3 855 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 CCHCR1Q8TD31 782 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 ZNF419Q96HQ0 510 aaPredicted RBP20.63■□□□□ 0.89
CLN3-250ENST00000636839 RAB6BQ9NRW1 208 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 TMEM248Q9NWD8 314 aa20.63■□□□□ 0.89
CLN3-250ENST00000636839 ATP8A1Q9Y2Q0 1164 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms