RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 SNX15Q9NRS6 342 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 PIGVQ9NUD9 493 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 SEPT10Q9P0V9 454 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 RPS6KL1Q9Y6S9 549 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 CREB3O43889 395 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 CCNT2O60583 730 aaKnown RBP13.08□□□□□ -0.32
LINC00540-203ENST00000631321 NEBLO76041 1014 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 F2P00734 622 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 RALBP11234 206 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 ADRA1BP35368 520 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 SERPINB8P50452 374 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 LIMK2P53671 638 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 AP2B1P63010 937 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 DEUP1Q05D60 604 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 GRB14Q14449 540 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 DPY19L2Q6NUT2 758 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 AAGABQ6PD74 315 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 PDZD4Q76G19 769 aaPredicted RBP13.08□□□□□ -0.32
LINC00540-203ENST00000631321 NETO2Q8NC67 525 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 MAML3Q96JK9 1138 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 SYT15Q9BQS2 421 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 BRD8Q9H0E9 1235 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 ABHD16BQ9H3Z7 469 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 CASS4Q9NQ75 786 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 PNPOQ9NVS9 261 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 KLK14Q9P0G3 267 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 TXNDC16Q9P2K2 825 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 C9IYK1 514 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 GABRDO14764 452 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 ADCY6O43306 1168 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 FKBP6O75344 327 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 BEST1O76090 585 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 USP1O94782 785 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 CYP2C9P11712 490 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 CPA3P15088 417 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 PTPN1P18031 435 aaKnown RBP13.07□□□□□ -0.32
LINC00540-203ENST00000631321 LRPAP1P30533 357 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 SPRP35270 261 aaPredicted RBP13.07□□□□□ -0.32
LINC00540-203ENST00000631321 GJA9P57773 515 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 GRIK3Q13003 919 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 INTS6LQ5JSJ4 861 aaKnown RBP13.07□□□□□ -0.32
LINC00540-203ENST00000631321 C1orf146Q5VVC0 180 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 SYPL2Q5VXT5 272 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 BSPRYQ5W0U4 402 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 KCTD11Q693B1 232 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 PGM2L1Q6PCE3 622 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 CLEC20AQ6ZU45 233 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 PID1Q7Z2X4 250 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 CLEC14AQ86T13 490 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 TP53INP2Q8IXH6 220 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 NME8Q8N427 588 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 DCLK2Q8N568 766 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.07□□□□□ -0.32
LINC00540-203ENST00000631321 OR52K1Q8NGK4 314 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 UCMAQ8WVF2 138 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 PIN4Q9Y237 131 aaKnown RBP13.07□□□□□ -0.32
LINC00540-203ENST00000631321 PCDHB12Q9Y5F1 795 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 PLXNB2O15031 1838 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 PDCD11Q14690 1871 aaKnown RBP13.07□□□□□ -0.32
LINC00540-203ENST00000631321 ZCWPW2A0A1B0GU75 182 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 ERI2A8K979 691 aaKnown RBP13.07□□□□□ -0.32
LINC00540-203ENST00000631321 CLDN5O00501 218 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 NCAM2O15394 837 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 FBXO21O94952 628 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 FYNP06241 537 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 ERCC2P18074 760 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 NDUFV1P49821 464 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 TUBP50607 506 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 COPAP53621 1224 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 ADAM17P78536 824 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 MXRA7P84157 204 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 PPIDQ08752 370 aaKnown RBP13.07□□□□□ -0.32
LINC00540-203ENST00000631321 R3HDM1Q15032 1099 aaKnown RBP13.07□□□□□ -0.32
LINC00540-203ENST00000631321 SNX17Q15036 470 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 GSTA3Q16772 222 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 TMEM154Q6P9G4 183 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 CES3Q6UWW8 571 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 USP50Q70EL3 339 aaPredicted RBP13.07□□□□□ -0.32
LINC00540-203ENST00000631321 RNF169Q8NCN4 708 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 TMEM40Q8WWA1 233 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 TINF2Q9BSI4 451 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 MCMBPQ9BTE3 642 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 GOLGA2P5Q9HBQ8 144 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 LRRC4Q9HBW1 653 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 WDR6Q9NNW5 1121 aaKnown RBP13.07□□□□□ -0.32
LINC00540-203ENST00000631321 KLHL8Q9P2G9 620 aaPredicted RBP13.07□□□□□ -0.32
LINC00540-203ENST00000631321 VANGL2Q9ULK5 521 aa13.07□□□□□ -0.32
LINC00540-203ENST00000631321 EIF4E1BA6NMX2 242 aaKnown RBP13.06□□□□□ -0.32
LINC00540-203ENST00000631321 FAM72CH0Y354 149 aa13.06□□□□□ -0.32
LINC00540-203ENST00000631321 PDHXO00330 501 aa13.06□□□□□ -0.32
LINC00540-203ENST00000631321 MPOP05164 745 aa13.06□□□□□ -0.32
LINC00540-203ENST00000631321 CYP2B6P20813 491 aa13.06□□□□□ -0.32
LINC00540-203ENST00000631321 SP100P23497 879 aaPredicted RBP13.06□□□□□ -0.32
LINC00540-203ENST00000631321 PRDX6P30041 224 aa13.06□□□□□ -0.32
LINC00540-203ENST00000631321 HIC1Q14526 733 aa13.06□□□□□ -0.32
LINC00540-203ENST00000631321 ANKRD20A4Q4UJ75 823 aa13.06□□□□□ -0.32
LINC00540-203ENST00000631321 FAM72AQ5TYM5 149 aa13.06□□□□□ -0.32
LINC00540-203ENST00000631321 FAM72DQ6L9T8 149 aa13.06□□□□□ -0.32
LINC00540-203ENST00000631321 HFE2Q6ZVN8 426 aa13.06□□□□□ -0.32
LINC00540-203ENST00000631321 FAM72BQ86X60 149 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms