RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 MCF2LO15068 1137 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 NARSO43776 548 aaKnown RBP9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 HNRNPA1P09651 372 aaKnown RBP eCLIP9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 ATF2P15336 505 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 ZFXP17010 805 aaPredicted RBP9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 HMGA1P17096 107 aaKnown RBP9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 TGM2P21980 687 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 AMPD1P23109 780 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 GGCXP38435 758 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 TAF10Q12962 218 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 NNTQ13423 1086 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 RAB33AQ14088 237 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 UAP1Q16222 522 aaPredicted RBP9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 TPGS2Q68CL5 300 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 C1orf228Q6PIY5 440 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 TP53INP2Q8IXH6 220 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 MREGQ8N565 214 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 CCDC89Q8N998 374 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 CCHCR1Q8TD31 782 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 GIPC2Q8TF65 315 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 LRRN4Q8WUT4 740 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 RNF34Q969K3 372 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 FBXO32Q969P5 355 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 ZNF707Q96C28 371 aaPredicted RBP9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 SLC39A13Q96H72 371 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 CEP295NLQ96MC4 621 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 OLFM3Q96PB7 478 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 MYADMQ96S97 322 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 TKTL2Q9H0I9 626 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 TBC1D17Q9HA65 648 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 USP29Q9HBJ7 922 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 TMEM51Q9NW97 253 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 ARHGEF38Q9NXL2 777 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 HSFX1Q9UBD0 423 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 XPO7Q9UIA9 1087 aaKnown RBP9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 HPCAL4Q9UM19 191 aa9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 MYO18AQ92614 2054 aaKnown RBP9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 RIF1Q5UIP0 2472 aaKnown RBP9.8□□□□□ -0.84
PDLIM5-223ENST00000627587 SLC38A8A6NNN8 435 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 KCNU1A8MYU2 1149 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 H3BRJ5 948 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 DCLK1O15075 740 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 TGM5O43548 720 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 RFPL2O75678 378 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 TBX18O95935 607 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 KRT14P02533 472 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 RBP3P10745 1247 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 VPS41P49754 854 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 PSEN1P49768 467 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 PLTPP55058 493 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 EIF3EP60228 445 aaKnown RBP9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 CALCOCO2Q13137 446 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 UBAP2Q5T6F2 1119 aaKnown RBP9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 MTSS1LQ765P7 747 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 TMC3Q7Z5M5 1100 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 ZC3H18Q86VM9 953 aaKnown RBP9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 NETO2Q8NC67 525 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 RSAD2Q8WXG1 361 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 ZBTB9Q96C00 473 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 SERPINB11Q96P15 392 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 EPB41L4BQ9H329 900 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 PRDM16Q9HAZ2 1276 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 TLR8Q9NR97 1041 aaKnown RBP9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 DTLQ9NZJ0 730 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 WHRNQ9P202 907 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 CA14Q9ULX7 337 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 CHD5Q8TDI0 1954 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 USP34Q70CQ2 3546 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 AGPSO00116 658 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 SGK1O00141 431 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 CREB3O43889 395 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 MFSD11O43934 449 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 POU2F2P09086 479 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 FSHRP23945 695 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 HOXA9P31269 272 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 HSPA9P38646 679 aaKnown RBP9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 MAGEA9P43362 315 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 ZNF135P52742 658 aaPredicted RBP9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 STARD6P59095 220 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 PRKCQQ04759 706 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 HTR4Q13639 388 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 BRMS1LQ5PSV4 323 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 MANEALQ5VSG8 457 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 RFX8Q6ZV50 586 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 CCDC33Q8N5R6 958 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 NPWQ8N729 165 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 SNF8Q96H20 258 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 FCRL2Q96LA5 508 aaPredicted RBP9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 FMO2Q99518 471 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 OSBPL6Q9BZF3 934 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 FAM129AQ9BZQ8 928 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 ARHGEF3Q9NR81 526 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 CLIC5Q9NZA1 410 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 YIPF1Q9Y548 306 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 HEY1Q9Y5J3 304 aa9.79□□□□□ -0.84
PDLIM5-223ENST00000627587 EEF2KO00418 725 aaKnown RBP9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 XYLBO75191 536 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 PPFIA2O75334 1257 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 LRIG2O94898 1065 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms