RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 HIBCHQ6NVY1 386 aaPredicted RBP16.12■□□□□ 0.17
CPSF1-213ENST00000620219 LRRC6Q86X45 466 aa16.12■□□□□ 0.17
CPSF1-213ENST00000620219 EXOC2Q96KP1 924 aa16.12■□□□□ 0.17
CPSF1-213ENST00000620219 OLA1Q9NTK5 396 aaKnown RBP16.12■□□□□ 0.17
CPSF1-213ENST00000620219 IL1RAPL1Q9NZN1 696 aa16.12■□□□□ 0.17
CPSF1-213ENST00000620219 TRIM49D1C9J1S8 452 aa16.12■□□□□ 0.17
CPSF1-213ENST00000620219 IRAK2O43187 625 aa16.12■□□□□ 0.17
CPSF1-213ENST00000620219 CSH1P0DML2 217 aa16.12■□□□□ 0.17
CPSF1-213ENST00000620219 CSH2P0DML3 217 aa16.12■□□□□ 0.17
CPSF1-213ENST00000620219 GARSP41250 739 aaKnown RBP16.12■□□□□ 0.17
CPSF1-213ENST00000620219 PKN2Q16513 984 aaKnown RBP16.12■□□□□ 0.17
CPSF1-213ENST00000620219 MAB21L3Q8N8X9 362 aa16.12■□□□□ 0.17
CPSF1-213ENST00000620219 FUBP3Q96I24 572 aaKnown RBP eCLIP16.12■□□□□ 0.17
CPSF1-213ENST00000620219 TRIM56Q9BRZ2 755 aaKnown RBP16.12■□□□□ 0.17
CPSF1-213ENST00000620219 DNMT3LQ9UJW3 386 aa16.12■□□□□ 0.17
CPSF1-213ENST00000620219 SDR42E2A6NKP2 422 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 OPHN1O60890 802 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 GABBR2O75899 941 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 LAG3P18627 525 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 IVDP26440 423 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 MARC1Q5VT66 337 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 ROPN1BQ9BZX4 212 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-213ENST00000620219 ROPN1Q9HAT0 212 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-213ENST00000620219 M0QZQ0 153 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 METTL18O95568 372 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 NUDT17P0C025 328 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 SCNN1BP51168 640 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 PRAMEP78395 509 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 NCBP2-AS2Q69YL0 99 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 PRCCQ92733 491 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-213ENST00000620219 IGSF21Q96ID5 467 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 FAM129AQ9BZQ8 928 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 PCMTD2Q9NV79 361 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 TYK2P29597 1187 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 AVPR1AP37288 418 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 GRIA1P42261 906 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 KBTBD12Q3ZCT8 623 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 OTOP3Q7RTS5 596 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 CYP4X1Q8N118 509 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 IRGQQ8WZA9 623 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 SERPINB12Q96P63 405 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 CASD1Q96PB1 797 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 CASP8AP2Q9UKL3 1982 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 SLC38A8A6NNN8 435 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 NCAM2O15394 837 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 POLBP06746 335 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 RHOCP08134 193 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 HOXC8P31273 242 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 KCNQ1P51787 676 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 FAM26DQ5JW98 314 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 RNASEH2BQ5TBB1 312 aaKnown RBP16.11■□□□□ 0.17
CPSF1-213ENST00000620219 EXOC3L1Q86VI1 746 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 BLOC1S5Q8TDH9 187 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 SEZ6LQ9BYH1 1024 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 FGFR1OP2Q9NVK5 253 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 VPS28Q9UK41 221 aa16.11■□□□□ 0.17
CPSF1-213ENST00000620219 COL6A1P12109 1028 aa16.1■□□□□ 0.17
CPSF1-213ENST00000620219 CCNB1P14635 433 aa16.1■□□□□ 0.17
CPSF1-213ENST00000620219 SP100P23497 879 aaPredicted RBP16.1■□□□□ 0.17
CPSF1-213ENST00000620219 PMLP29590 882 aa16.1■□□□□ 0.17
CPSF1-213ENST00000620219 GPR17Q13304 367 aa16.1■□□□□ 0.17
CPSF1-213ENST00000620219 SREK1Q8WXA9 508 aaKnown RBP16.1■□□□□ 0.17
CPSF1-213ENST00000620219 CHMP6Q96FZ7 201 aa16.1■□□□□ 0.17
CPSF1-213ENST00000620219 TLK1Q9UKI8 766 aa16.1■□□□□ 0.17
CPSF1-213ENST00000620219 ABHD14A-ACY1A0A1B0GW23 586 aa16.1■□□□□ 0.17
CPSF1-213ENST00000620219 E9PAM4 449 aa16.1■□□□□ 0.17
CPSF1-213ENST00000620219 NAPEPLDQ6IQ20 393 aa16.1■□□□□ 0.17
CPSF1-213ENST00000620219 TSR3Q9UJK0 312 aaKnown RBP16.1■□□□□ 0.17
CPSF1-213ENST00000620219 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.1■□□□□ 0.17
CPSF1-213ENST00000620219 ADAM12O43184 909 aa16.1■□□□□ 0.17
CPSF1-213ENST00000620219 FAM163BP0C2L3 166 aa16.1■□□□□ 0.17
CPSF1-213ENST00000620219 OLIG2Q13516 323 aa16.1■□□□□ 0.17
CPSF1-213ENST00000620219 MSS51Q4VC12 460 aa16.1■□□□□ 0.17
CPSF1-213ENST00000620219 BADQ92934 168 aa16.1■□□□□ 0.17
CPSF1-213ENST00000620219 RTP3Q9BQQ7 232 aa16.1■□□□□ 0.17
CPSF1-213ENST00000620219 C12orf65Q9H3J6 166 aaKnown RBP16.1■□□□□ 0.17
CPSF1-213ENST00000620219 A0A0G2JMZ2 1700 aa16.1■□□□□ 0.17
CPSF1-213ENST00000620219 ZBTB24O43167 697 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-213ENST00000620219 BUD23O43709 281 aaKnown RBP16.09■□□□□ 0.17
CPSF1-213ENST00000620219 LRRC26Q2I0M4 334 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 RABGAP1LQ5R372 815 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 FYB2Q5VWT5 728 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 LRRC34Q8IZ02 419 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 GABPB2Q8TAK5 448 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-213ENST00000620219 FAM136AQ96C01 138 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 TGS1Q96RS0 853 aaKnown RBP16.09■□□□□ 0.17
CPSF1-213ENST00000620219 ZYG11BQ9C0D3 744 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 IGFLR1Q9H665 355 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 ATP13A1Q9HD20 1204 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 TTC3P53804 2025 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 HSPA1AP0DMV8 641 aaKnown RBP16.09■□□□□ 0.17
CPSF1-213ENST00000620219 HSPA1BP0DMV9 641 aaKnown RBP16.09■□□□□ 0.17
CPSF1-213ENST00000620219 SLC10A2Q12908 348 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-213ENST00000620219 GEN1Q17RS7 908 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 BRMS1LQ5PSV4 323 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 PPM1LQ5SGD2 360 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 GPATCH11Q8N954 259 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 ST13P5Q8NFI4 369 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-213ENST00000620219 SPATA22Q8NHS9 363 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 KHSRPQ92945 711 aaKnown RBP eCLIP16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms