RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 MTA1Q13330 715 aa16.51■□□□□ 0.23
BRCA1-228ENST00000618469 AUHQ13825 339 aaKnown RBP16.51■□□□□ 0.23
BRCA1-228ENST00000618469 NR1I3Q14994 352 aa16.51■□□□□ 0.23
BRCA1-228ENST00000618469 ACAP1Q15027 740 aa16.51■□□□□ 0.23
BRCA1-228ENST00000618469 BRMS1LQ5PSV4 323 aa16.51■□□□□ 0.23
BRCA1-228ENST00000618469 TTC39BQ5VTQ0 682 aaPredicted RBP16.51■□□□□ 0.23
BRCA1-228ENST00000618469 E4F1Q66K89 784 aaPredicted RBP16.51■□□□□ 0.23
BRCA1-228ENST00000618469 KIAA0907Q7Z7F0 614 aaPredicted RBP16.51■□□□□ 0.23
BRCA1-228ENST00000618469 PHF13Q86YI8 300 aaPredicted RBP16.51■□□□□ 0.23
BRCA1-228ENST00000618469 OLIG1Q8TAK6 271 aa16.51■□□□□ 0.23
BRCA1-228ENST00000618469 FIBINQ8TAL6 211 aa16.51■□□□□ 0.23
BRCA1-228ENST00000618469 PGAP3Q96FM1 320 aaPredicted RBP16.51■□□□□ 0.23
BRCA1-228ENST00000618469 TTYH3Q9C0H2 523 aa16.51■□□□□ 0.23
BRCA1-228ENST00000618469 TKTL2Q9H0I9 626 aa16.51■□□□□ 0.23
BRCA1-228ENST00000618469 SLC6A17Q9H1V8 727 aa16.51■□□□□ 0.23
BRCA1-228ENST00000618469 CD248Q9HCU0 757 aa16.51■□□□□ 0.23
BRCA1-228ENST00000618469 VPS45Q9NRW7 570 aa16.51■□□□□ 0.23
BRCA1-228ENST00000618469 ARHGEF38Q9NXL2 777 aa16.51■□□□□ 0.23
BRCA1-228ENST00000618469 VANGL2Q9ULK5 521 aa16.51■□□□□ 0.23
BRCA1-228ENST00000618469 PAXBP1Q9Y5B6 917 aa16.51■□□□□ 0.23
BRCA1-228ENST00000618469 AKAP13Q12802 2813 aa16.51■□□□□ 0.23
BRCA1-228ENST00000618469 NYNRINQ9P2P1 1898 aaKnown RBP16.5■□□□□ 0.23
BRCA1-228ENST00000618469 A0A1B0GVM2 712 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 TCAF2A6NFQ2 919 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 PATE3B3GLJ2 98 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 TIMM44O43615 452 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 SYNCRIPO60506 623 aaKnown RBP16.5■□□□□ 0.23
BRCA1-228ENST00000618469 F9P00740 461 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 EPHX1P07099 455 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 HLA-EP13747 358 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 POLR2EP19388 210 aaKnown RBP16.5■□□□□ 0.23
BRCA1-228ENST00000618469 P2RY2P41231 377 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 IRAK1P51617 712 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 GSCP56915 257 aaPredicted RBP16.5■□□□□ 0.23
BRCA1-228ENST00000618469 UBASH3AP57075 661 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 ATP11AP98196 1134 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 PTP4A2Q12974 167 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 ENPP2Q13822 863 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 CDO1Q16878 200 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 FSCBQ5H9T9 825 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 SFMBT2Q5VUG0 894 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 FBXL22Q6P050 247 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 KIAA1324Q6UXG2 1013 aaKnown RBP16.5■□□□□ 0.23
BRCA1-228ENST00000618469 MON1BQ7L1V2 547 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 ARCQ7LC44 396 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 IRF2BP2Q7Z5L9 587 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 C11orf74Q86VG3 221 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 CACUL1Q86Y37 369 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 ZNF366Q8N895 744 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 JOSD2Q8TAC2 188 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 SELENOOQ9BVL4 669 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 SCNM1Q9BWG6 230 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 SIK2Q9H0K1 926 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 WDCPQ9H6R7 721 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 ANLNQ9NQW6 1124 aa16.5■□□□□ 0.23
BRCA1-228ENST00000618469 SRRM3A6NNA2 597 aaPredicted RBP16.49■□□□□ 0.23
BRCA1-228ENST00000618469 I6L893 689 aaPredicted RBP16.49■□□□□ 0.23
BRCA1-228ENST00000618469 ATP5BP06576 529 aaKnown RBP16.49■□□□□ 0.23
BRCA1-228ENST00000618469 DLDP09622 509 aaKnown RBP16.49■□□□□ 0.23
BRCA1-228ENST00000618469 SDC4P31431 198 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 CSKP41240 450 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 NUMBP49757 651 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 C1QBPQ07021 282 aaKnown RBP16.49■□□□□ 0.23
BRCA1-228ENST00000618469 PTPRNQ16849 979 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 C15orf59Q2T9L4 293 aaPredicted RBP16.49■□□□□ 0.23
BRCA1-228ENST00000618469 UAP1L1Q3KQV9 507 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 PITRM1Q5JRX3 1037 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 PMS2CLQ68D20 193 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 DNAJC24Q6P3W2 148 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 FAM131BQ86XD5 332 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 CCAR2Q8N163 923 aaKnown RBP16.49■□□□□ 0.23
BRCA1-228ENST00000618469 FRMD1Q8N878 549 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 KDF1Q8NAX2 398 aaPredicted RBP16.49■□□□□ 0.23
BRCA1-228ENST00000618469 C3orf20Q8ND61 904 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 RXFP2Q8WXD0 754 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 IGSF8Q969P0 613 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 ZC3H10Q96K80 434 aaKnown RBP16.49■□□□□ 0.23
BRCA1-228ENST00000618469 LMLNQ96KR4 655 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 MRGPRX1Q96LB2 322 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 SYT11Q9BT88 431 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 TMEM121BQ9BXQ6 578 aaPredicted RBP16.49■□□□□ 0.23
BRCA1-228ENST00000618469 TSPY26PQ9H489 355 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 TMPRSS4Q9NRS4 437 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 IFNKQ9P0W0 207 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 INTS6Q9UL03 887 aaKnown RBP16.49■□□□□ 0.23
BRCA1-228ENST00000618469 PLA2G4CQ9UP65 541 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 WASF3Q9UPY6 502 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 PCDHGA5Q9Y5G8 931 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 SNX10Q9Y5X0 201 aa16.49■□□□□ 0.23
BRCA1-228ENST00000618469 FASNP49327 2511 aaKnown RBP16.48■□□□□ 0.23
BRCA1-228ENST00000618469 LNP1A1A4G5 178 aa16.48■□□□□ 0.23
BRCA1-228ENST00000618469 C2CD4BA6NLJ0 364 aa16.48■□□□□ 0.23
BRCA1-228ENST00000618469 RHOBTB1O94844 696 aa16.48■□□□□ 0.23
BRCA1-228ENST00000618469 MOCS3O95396 460 aa16.48■□□□□ 0.23
BRCA1-228ENST00000618469 KRT3P12035 628 aa16.48■□□□□ 0.23
BRCA1-228ENST00000618469 PDGFRAP16234 1089 aa16.48■□□□□ 0.23
BRCA1-228ENST00000618469 TNFAIP3P21580 790 aa16.48■□□□□ 0.23
BRCA1-228ENST00000618469 BYSLQ13895 437 aaKnown RBP16.48■□□□□ 0.23
BRCA1-228ENST00000618469 NFKBIBQ15653 356 aa16.48■□□□□ 0.23
BRCA1-228ENST00000618469 MAP7D1Q3KQU3 841 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms