RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 LRG1P02750 347 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 SLC2A4P14672 509 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 PRKAA2P54646 552 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 C9orf131Q5VYM1 1079 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 RNF43Q68DV7 783 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 FAM183BPQ6ZVS7 135 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 PIGZQ86VD9 579 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 KCTD14Q9BQ13 255 aaPredicted RBP14.29□□□□□ -0.12
CPSF1-212ENST00000616140 SMPD4Q9NXE4 827 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 NFASCO94856 1347 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 PDHXO00330 501 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 ALOX15P16050 662 aaPredicted RBP14.28□□□□□ -0.12
CPSF1-212ENST00000616140 EPHX2P34913 555 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 HALP42357 657 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 PGS1Q32NB8 556 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 EEF1DP3Q658K8 133 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 LPCAT2Q7L5N7 544 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 ZNF410Q86VK4 478 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 FAM9CQ8IZT9 166 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 PCDH20Q8N6Y1 951 aaKnown RBP14.28□□□□□ -0.12
CPSF1-212ENST00000616140 RERGLQ9H628 205 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 COPS7BQ9H9Q2 264 aaPredicted RBP14.28□□□□□ -0.12
CPSF1-212ENST00000616140 TNFSF13BQ9Y275 285 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 GNG14A0A1W2PPG7 69 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 NKRFO15226 690 aaKnown RBP eCLIP14.28□□□□□ -0.12
CPSF1-212ENST00000616140 SYNCRIPO60506 623 aaKnown RBP14.28□□□□□ -0.12
CPSF1-212ENST00000616140 HPCAP84074 193 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 PLEKHA7Q6IQ23 1121 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 TRABD2AQ86V40 505 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 PALB2Q86YC2 1186 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 CERS2Q96G23 380 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 RMND5BQ96G75 393 aaPredicted RBP14.28□□□□□ -0.12
CPSF1-212ENST00000616140 SERPINB11Q96P15 392 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 HSD3B7Q9H2F3 369 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 TMEM245Q9H330 911 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 FBXO44Q9H4M3 255 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 ATP13A1Q9HD20 1204 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 MGAT4DA6NG13 374 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 CPSF4O95639 269 aaKnown RBP14.28□□□□□ -0.12
CPSF1-212ENST00000616140 OCM2P0CE71 109 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 OCMP0CE72 109 aaPredicted RBP14.28□□□□□ -0.12
CPSF1-212ENST00000616140 FCGRTP55899 365 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 QPCTQ16769 361 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 PSTKQ8IV42 348 aaKnown RBP14.28□□□□□ -0.12
CPSF1-212ENST00000616140 DCUN1D5Q9BTE7 237 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 SLC25A23Q9BV35 468 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 DPY30Q9C005 99 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 GBA2Q9HCG7 927 aaPredicted RBP14.28□□□□□ -0.12
CPSF1-212ENST00000616140 DDX18Q9NVP1 670 aaKnown RBP14.28□□□□□ -0.12
CPSF1-212ENST00000616140 TMEM51Q9NW97 253 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 SNCAIPQ9Y6H5 919 aa14.28□□□□□ -0.12
CPSF1-212ENST00000616140 A0A1W2PPM1 405 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 H7C4K7 107 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 ZMPSTE24O75844 475 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 RPL14P50914 215 aaKnown RBP14.27□□□□□ -0.12
CPSF1-212ENST00000616140 CCNG1P51959 295 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 ZC3H12AQ5D1E8 599 aaKnown RBP14.27□□□□□ -0.12
CPSF1-212ENST00000616140 CRELD2Q6UXH1 353 aaPredicted RBP14.27□□□□□ -0.12
CPSF1-212ENST00000616140 STK32CQ86UX6 486 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 PPP1R13LQ8WUF5 828 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 ZFYVE19Q96K21 471 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 SPATA16Q9BXB7 569 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 FBXO6Q9NRD1 293 aaPredicted RBP14.27□□□□□ -0.12
CPSF1-212ENST00000616140 NMRK1Q9NWW6 199 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 R3HDM2Q9Y2K5 976 aaKnown RBP14.27□□□□□ -0.12
CPSF1-212ENST00000616140 ALOX15BO15296 676 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 CCNT2O60583 730 aaKnown RBP14.27□□□□□ -0.12
CPSF1-212ENST00000616140 TRUB2O95900 331 aaKnown RBP14.27□□□□□ -0.12
CPSF1-212ENST00000616140 LDLRP01130 860 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 WSCD1Q658N2 575 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 ZFP1Q6P2D0 407 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 UNC93AQ86WB7 457 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 TRIM69Q86WT6 500 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 GLMNQ92990 594 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 ABHD8Q96I13 439 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 HSFY1Q96LI6 401 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 IL22Q9GZX6 179 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 RNPEPQ9H4A4 650 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 TLR8Q9NR97 1041 aaKnown RBP14.27□□□□□ -0.12
CPSF1-212ENST00000616140 TUBGCP4Q9UGJ1 667 aa14.27□□□□□ -0.12
CPSF1-212ENST00000616140 TCRBV9S1A1TA0A576 114 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 ADM5C9JUS6 153 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 TNFAIP8O95379 198 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 KRT6AP02538 564 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 KRT6BP04259 564 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 DNAJB2P25686 324 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 GPC1P35052 558 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 PTDSS1P48651 473 aaKnown RBP14.27□□□□□ -0.13
CPSF1-212ENST00000616140 KRT6CP48668 564 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 RAP1GDS1P52306 607 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 SAMD4BQ5PRF9 694 aaKnown RBP14.27□□□□□ -0.13
CPSF1-212ENST00000616140 TLK2Q86UE8 772 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 RNF145Q96MT1 663 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 POMKQ9H5K3 350 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 PCDHB5Q9Y5E4 795 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 ARHGAP23Q9P227 1491 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 ROBO3Q96MS0 1386 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 LINC00854A0A1B0GVQ3 168 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 PRR23AA6NEV1 266 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 AVILO75366 819 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms