RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 RHOQP17081 205 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 PTPN2P17706 415 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 TACR2P21452 398 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 SERPINB6P35237 376 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 ITGA8P53708 1063 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 SLC7A9P82251 487 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 PPIDQ08752 370 aaKnown RBP14.67□□□□□ -0.06
USP39-220ENST00000613444 SLC5A9Q2M3M2 681 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 PDZD4Q76G19 769 aaPredicted RBP14.67□□□□□ -0.06
USP39-220ENST00000613444 VN1R2Q8NFZ6 395 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 HDAC11Q96DB2 347 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 SLC46A2Q9BY10 475 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 PRKD2Q9BZL6 878 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 FAM129AQ9BZQ8 928 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 ZYG11BQ9C0D3 744 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 TLE6Q9H808 572 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 TMEM248Q9NWD8 314 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 CPQQ9Y646 472 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 CLUHO75153 1309 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 DNALI1O14645 258 aaPredicted RBP14.66□□□□□ -0.06
USP39-220ENST00000613444 NCAM2O15394 837 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 PFKLP17858 780 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 GARSP41250 739 aaKnown RBP14.66□□□□□ -0.06
USP39-220ENST00000613444 PRSS36Q5K4E3 855 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 ZNF697Q5TEC3 545 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 IZUMO3Q5VZ72 239 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 HIBCHQ6NVY1 386 aaPredicted RBP14.66□□□□□ -0.06
USP39-220ENST00000613444 LRRC31Q6UY01 552 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 CHSY1Q86X52 802 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 HTR3CQ8WXA8 447 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 CELF6Q96J87 481 aaKnown RBP14.66□□□□□ -0.06
USP39-220ENST00000613444 FMO2Q99518 471 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 FARP1Q9Y4F1 1045 aaPredicted RBP14.66□□□□□ -0.06
USP39-220ENST00000613444 C5orf42Q9H799 3197 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.66□□□□□ -0.06
USP39-220ENST00000613444 C5orf60A6NFR6 353 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 PPP1R12AO14974 1030 aaPredicted RBP14.66□□□□□ -0.06
USP39-220ENST00000613444 GCATO75600 419 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 SASH3O75995 380 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 IRF1P10914 325 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 NRIP1P48552 1158 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 SLC11A2P49281 568 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 SMAD3P84022 425 aaKnown RBP14.66□□□□□ -0.06
USP39-220ENST00000613444 CALCOCO2Q13137 446 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 RNASEH2BQ5TBB1 312 aaKnown RBP14.66□□□□□ -0.06
USP39-220ENST00000613444 RFWD3Q6PCD5 774 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 POTEHQ6S545 545 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 Q6ZNB5 142 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 UMODL1-AS1Q8N2C9 162 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 LZTR1Q8N653 840 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 ZSCAN18Q8TBC5 510 aaPredicted RBP14.66□□□□□ -0.06
USP39-220ENST00000613444 TIFAQ96CG3 184 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 P2RY11Q96G91 374 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 PRICKLE1Q96MT3 831 aaPredicted RBP14.66□□□□□ -0.06
USP39-220ENST00000613444 TXLNGYQ9BZA5 131 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 SLC39A8Q9C0K1 460 aa14.66□□□□□ -0.06
USP39-220ENST00000613444 CCDC195A0A1B0GUA6 201 aa14.65□□□□□ -0.06
USP39-220ENST00000613444 GFRA2O00451 464 aa14.65□□□□□ -0.06
USP39-220ENST00000613444 XYLBO75191 536 aa14.65□□□□□ -0.06
USP39-220ENST00000613444 MX2P20592 715 aa14.65□□□□□ -0.06
USP39-220ENST00000613444 NTHL1P78549 312 aa14.65□□□□□ -0.06
USP39-220ENST00000613444 WASHC5Q12768 1159 aa14.65□□□□□ -0.06
USP39-220ENST00000613444 HEATR6Q6AI08 1181 aaKnown RBP14.65□□□□□ -0.06
USP39-220ENST00000613444 CIR1Q86X95 450 aaPredicted RBP14.65□□□□□ -0.06
USP39-220ENST00000613444 CCDC110Q8TBZ0 833 aa14.65□□□□□ -0.06
USP39-220ENST00000613444 DEPDC1BQ8WUY9 529 aa14.65□□□□□ -0.06
USP39-220ENST00000613444 RPRD1AQ96P16 312 aaPredicted RBP14.65□□□□□ -0.06
USP39-220ENST00000613444 GCNAQ96QF7 691 aa14.65□□□□□ -0.06
USP39-220ENST00000613444 BRD8Q9H0E9 1235 aa14.65□□□□□ -0.06
USP39-220ENST00000613444 DPP7Q9UHL4 492 aa14.65□□□□□ -0.06
USP39-220ENST00000613444 TPX2Q9ULW0 747 aaKnown RBP14.65□□□□□ -0.06
USP39-220ENST00000613444 TRAV19A0A0A6YYK7 116 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 F5H5T6 163 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 MAP2K7O14733 419 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 FGF19O95750 216 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 LATS1O95835 1130 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 CKMP06732 381 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 AP1B1Q10567 949 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 TEAD2Q15562 447 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 ADGRF1Q5T601 910 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 ARHGAP36Q6ZRI8 547 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 GRASPQ7Z6J2 395 aaPredicted RBP14.64□□□□□ -0.07
USP39-220ENST00000613444 TFAP2DQ7Z6R9 452 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 LGI2Q8N0V4 545 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 MREGQ8N565 214 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 LEMD2Q8NC56 503 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 BBOF1Q8ND07 529 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 CCNYQ8ND76 341 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 CPT1BQ92523 772 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 LRRC45Q96CN5 670 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 MRPL38Q96DV4 380 aaKnown RBP14.64□□□□□ -0.07
USP39-220ENST00000613444 ANAPC5Q9UJX4 755 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 SGSHP51688 502 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 CAV1Q03135 178 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 ZNF33AQ06730 810 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 CASP8Q14790 479 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 TMC3Q7Z5M5 1100 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 FAM217AQ8IXS0 508 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 CFAP52Q8N1V2 620 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 NAT8LQ8N9F0 302 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms