RNA–Protein interactions for RNA: ENST00000612558.4

CCDC47-207, Transcript of coiled-coil domain containing 47, humanhuman

TSL 5 BASIC

Gene CCDC47, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-207ENST00000612558 APOEP02649 317 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 NUDT17P0C025 328 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 SRGAP2BP0DMP2 458 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 ATP2A2P16615 1042 aaKnown RBP9.17□□□□□ -0.94
CCDC47-207ENST00000612558 HMGA1P17096 107 aaKnown RBP9.17□□□□□ -0.94
CCDC47-207ENST00000612558 MX2P20592 715 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 OAS2P29728 719 aaKnown RBP9.17□□□□□ -0.94
CCDC47-207ENST00000612558 HOXC13P31276 330 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 PPP3CCP48454 512 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 EIF3BP55884 814 aaKnown RBP9.17□□□□□ -0.94
CCDC47-207ENST00000612558 RING1Q06587 406 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 VEPH1Q14D04 833 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 PRKD1Q15139 912 aaPredicted RBP9.17□□□□□ -0.94
CCDC47-207ENST00000612558 TAF12Q16514 161 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 MANEALQ5VSG8 457 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 DENND2CQ68D51 928 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 DESI1Q6ICB0 168 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 ATP6V0D2Q8N8Y2 350 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 NAT8LQ8N9F0 302 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 KLHL23Q8NBE8 558 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 FAM174AQ8TBP5 190 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 HTR3CQ8WXA8 447 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 AUTS2Q8WXX7 1259 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 PRCCQ92733 491 aaPredicted RBP9.17□□□□□ -0.94
CCDC47-207ENST00000612558 TBC1D31Q96DN5 1066 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 TRMT2BQ96GJ1 504 aaKnown RBP9.17□□□□□ -0.94
CCDC47-207ENST00000612558 ZNF512Q96ME7 567 aaPredicted RBP9.17□□□□□ -0.94
CCDC47-207ENST00000612558 RBM15Q96T37 977 aaKnown RBP eCLIP9.17□□□□□ -0.94
CCDC47-207ENST00000612558 HTATIP2Q9BUP3 242 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 MTIF3Q9H2K0 278 aaKnown RBP9.17□□□□□ -0.94
CCDC47-207ENST00000612558 EPB41L4BQ9H329 900 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 PRDM12Q9H4Q4 367 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 CATSPERBQ9H7T0 1116 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 YIPF1Q9Y548 306 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 HS3ST4Q9Y661 456 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 NFS1Q9Y697 457 aa9.17□□□□□ -0.94
CCDC47-207ENST00000612558 SLC12A8A0AV02 714 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 ZNF840PA6NDX5 716 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 CHADO15335 359 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 RIPK2O43353 540 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 STK10O94804 968 aaKnown RBP9.16□□□□□ -0.94
CCDC47-207ENST00000612558 TTC4O95801 387 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 MOCS2O96007 188 aaPredicted RBP9.16□□□□□ -0.94
CCDC47-207ENST00000612558 IGLV3-27P01718 113 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 SYN1P17600 705 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 LORP23490 312 aaPredicted RBP9.16□□□□□ -0.94
CCDC47-207ENST00000612558 ATP5C1P36542 298 aaKnown RBP9.16□□□□□ -0.94
CCDC47-207ENST00000612558 BMPR1AP36894 532 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 EPHB3P54753 998 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 NRLP54845 237 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 BASP1P80723 227 aaKnown RBP9.16□□□□□ -0.94
CCDC47-207ENST00000612558 CBX1P83916 185 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 AP1B1Q10567 949 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 SLC29A2Q14542 456 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 CEP85LQ5SZL2 805 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 HECTD3Q5T447 861 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 RWDD4Q6NW29 188 aaKnown RBP9.16□□□□□ -0.94
CCDC47-207ENST00000612558 KLHDC10Q6PID8 442 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 TMC7Q7Z402 723 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 MIB1Q86YT6 1006 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 LZTR1Q8N653 840 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 CCNYQ8ND76 341 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 LRRN4Q8WUT4 740 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 ZBTB9Q96C00 473 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 BTN2A3PQ96KV6 586 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 LGMNQ99538 433 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 LBHD1Q9BQE6 289 aaPredicted RBP9.16□□□□□ -0.94
CCDC47-207ENST00000612558 PHACTR1Q9C0D0 580 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 KLC2Q9H0B6 622 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 CDC42EP4Q9H3Q1 356 aaKnown RBP9.16□□□□□ -0.94
CCDC47-207ENST00000612558 CCSER2Q9H7U1 834 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 RAB6BQ9NRW1 208 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 TRPM5Q9NZQ8 1165 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 DNMT3LQ9UJW3 386 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 NEU3Q9UQ49 428 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 LZTS1Q9Y250 596 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 RWDD3Q9Y3V2 267 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 HBS1LQ9Y450 684 aaKnown RBP9.16□□□□□ -0.94
CCDC47-207ENST00000612558 MYO18AQ92614 2054 aaKnown RBP9.16□□□□□ -0.94
CCDC47-207ENST00000612558 GOLGA6L10A6NI86 522 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 GOLGA8KD6RF30 607 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 E9PAM4 449 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 EIF3HO15372 352 aaKnown RBP eCLIP9.16□□□□□ -0.94
CCDC47-207ENST00000612558 MTSS1O43312 755 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 CXCL14O95715 111 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 CNPP09543 421 aaKnown RBP9.16□□□□□ -0.94
CCDC47-207ENST00000612558 VAV1P15498 845 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 CA8P35219 290 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 MAGEA6P43360 314 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 TUBP50607 506 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 WDR4P57081 412 aaKnown RBP9.16□□□□□ -0.94
CCDC47-207ENST00000612558 ZNF33AQ06730 810 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 PPIDQ08752 370 aaKnown RBP9.16□□□□□ -0.94
CCDC47-207ENST00000612558 ZNF844Q08AG5 666 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 IFFO1Q0D2I5 559 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 GALNT2Q10471 571 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 TWF1Q12792 350 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 PLD1Q13393 1074 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 KCNJ11Q14654 390 aa9.16□□□□□ -0.94
CCDC47-207ENST00000612558 HIF1AQ16665 826 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms