RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 SATB1Q01826 763 aa17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 SEMA3BQ13214 749 aa17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 ZNF177Q13360 481 aaPredicted RBP17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 TCEAL1Q15170 157 aa17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 HSF5Q4G112 596 aaPredicted RBP17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 ERMARDQ5T6L9 678 aa17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 EGFLAMQ63HQ2 1017 aa17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 ACDQ96AP0 544 aa17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 SNRNP25Q9BV90 132 aaKnown RBP17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 ZYG11BQ9C0D3 744 aa17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 PRMT8Q9NR22 394 aaPredicted RBP17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 POLR3BQ9NW08 1133 aaPredicted RBP17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 GPATCH2LQ9NWQ4 482 aa17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 KIAA1522Q9P206 1035 aaPredicted RBP17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 ZNF212Q9UDV6 495 aa17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 INTS6Q9UL03 887 aaKnown RBP17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 AP4E1Q9UPM8 1137 aa17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 NEU3Q9UQ49 428 aa17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 TBC1D30Q9Y2I9 924 aa17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 TIMM44O43615 452 aa17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 MTA2O94776 668 aa17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 PROSCO94903 275 aa17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 IPO7O95373 1038 aaKnown RBP17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 KLF8O95600 359 aaPredicted RBP17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 HNRNPLP14866 589 aaKnown RBP eCLIP17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 IL1R2P27930 398 aa17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 ANGPT1Q15389 498 aa17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 FUT11Q495W5 492 aa17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 MBLAC2Q68D91 279 aa17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 SYT13Q7L8C5 426 aa17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 TFAP2DQ7Z6R9 452 aa17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 CCDC33Q8N5R6 958 aa17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 OR52K2Q8NGK3 314 aa17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 UCMAQ8WVF2 138 aa17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 ACOX2Q99424 681 aa17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 PRRX2Q99811 253 aa17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 CIPCQ9C0C6 399 aa17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 LUC7LQ9NQ29 371 aaKnown RBP17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 LCMT1Q9UIC8 334 aa17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 MMP17Q9ULZ9 603 aa17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 TFR2Q9UP52 801 aa17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 REXO2Q9Y3B8 237 aaKnown RBP17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 WDFY4Q6ZS81 3184 aa17.03■□□□□ 0.32
CCDC28A-202ENST00000611852 SGK1O00141 431 aa17.02■□□□□ 0.32
CCDC28A-202ENST00000611852 ADAM23O75077 832 aa17.02■□□□□ 0.32
CCDC28A-202ENST00000611852 PAPSS2O95340 614 aaPredicted RBP17.02■□□□□ 0.32
CCDC28A-202ENST00000611852 OXCT1P55809 520 aa17.02■□□□□ 0.32
CCDC28A-202ENST00000611852 SLC12A1Q13621 1099 aa17.02■□□□□ 0.32
CCDC28A-202ENST00000611852 CA9Q16790 459 aa17.02■□□□□ 0.32
CCDC28A-202ENST00000611852 PLEKHG6Q3KR16 790 aa17.02■□□□□ 0.32
CCDC28A-202ENST00000611852 PITRM1Q5JRX3 1037 aa17.02■□□□□ 0.32
CCDC28A-202ENST00000611852 RWDD4Q6NW29 188 aaKnown RBP17.02■□□□□ 0.32
CCDC28A-202ENST00000611852 TRMT11Q7Z4G4 463 aaKnown RBP17.02■□□□□ 0.32
CCDC28A-202ENST00000611852 PSTKQ8IV42 348 aaKnown RBP17.02■□□□□ 0.32
CCDC28A-202ENST00000611852 APCDD1Q8J025 514 aa17.02■□□□□ 0.32
CCDC28A-202ENST00000611852 TXNDC5Q8NBS9 432 aaKnown RBP17.02■□□□□ 0.32
CCDC28A-202ENST00000611852 PRSS33Q8NF86 280 aa17.02■□□□□ 0.32
CCDC28A-202ENST00000611852 SORCS1Q8WY21 1168 aa17.02■□□□□ 0.32
CCDC28A-202ENST00000611852 TTC17Q96AE7 1141 aa17.02■□□□□ 0.32
CCDC28A-202ENST00000611852 TBC1D31Q96DN5 1066 aa17.02■□□□□ 0.32
CCDC28A-202ENST00000611852 THAP10Q9P2Z0 257 aaPredicted RBP17.02■□□□□ 0.32
CCDC28A-202ENST00000611852 CREB3O43889 395 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 POLR2EP19388 210 aaKnown RBP17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 MZF1P28698 734 aaPredicted RBP17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 OR1E1P30953 314 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 NTSR1P30989 418 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 HOXC13P31276 330 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 CSKP41240 450 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 SLC25A11Q02978 314 aaKnown RBP17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 DMC1Q14565 340 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 BOLA3Q53S33 107 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 KCNT1Q5JUK3 1230 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 TXNRD3NBQ6F5E7 133 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 SETD3Q86TU7 594 aaPredicted RBP17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 NLRP14Q86W24 1093 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 CPNE8Q86YQ8 564 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 CHPFQ8IZ52 775 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 ACRBPQ8NEB7 543 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 ALG14Q96F25 216 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 EPAS1Q99814 870 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 KCNH6Q9H252 994 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 DHX35Q9H5Z1 703 aaKnown RBP17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 RETREG1Q9H6L5 497 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 ZWILCHQ9H900 591 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 FBXO4Q9UKT5 387 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 HCN4Q9Y3Q4 1203 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 MUC6Q6W4X9 2439 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 CACNA1HO95180 2353 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 RCCD1A6NED2 376 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 K7ESF4 209 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 NPC1O15118 1278 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 MOCS3O95396 460 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 ATP5BP06576 529 aaKnown RBP17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 DLDP09622 509 aaKnown RBP17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 TDGF1P13385 188 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 RHOQP17081 205 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 MAN1A1P33908 653 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 ARHGAP25P42331 645 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 PLK1P53350 603 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 TCF15Q12870 199 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms