RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 PITX1P78337 314 aaPredicted RBP10.12□□□□□ -0.79
VRK3-216ENST00000599342 APBA1Q02410 837 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 SULT2A1Q06520 285 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 MTA1Q13330 715 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 SLC12A1Q13621 1099 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 ARID5BQ14865 1188 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 SUZ12Q15022 739 aaKnown RBP10.12□□□□□ -0.79
VRK3-216ENST00000599342 TAF5Q15542 800 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 CST6Q15828 149 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 MAN2A1Q16706 1144 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 KIAA0895LQ68EN5 471 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 SMYD5Q6GMV2 418 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 OR6B2Q6IFH4 312 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 FAM183BPQ6ZVS7 135 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 MMAAQ8IVH4 418 aaKnown RBP10.12□□□□□ -0.79
VRK3-216ENST00000599342 DEFB106AQ8N104 65 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 CCAR2Q8N163 923 aaKnown RBP10.12□□□□□ -0.79
VRK3-216ENST00000599342 KDF1Q8NAX2 398 aaPredicted RBP10.12□□□□□ -0.79
VRK3-216ENST00000599342 C1orf131Q8NDD1 294 aaKnown RBP10.12□□□□□ -0.79
VRK3-216ENST00000599342 GATA6Q92908 595 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 MRGPRX3Q96LB0 322 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 RPRD1AQ96P16 312 aaPredicted RBP10.12□□□□□ -0.79
VRK3-216ENST00000599342 SLC2A13Q96QE2 648 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 PPP1R9BQ96SB3 815 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 PDCL3Q9H2J4 239 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 IL21RQ9HBE5 538 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 TM9SF3Q9HD45 589 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 OSGEPQ9NPF4 335 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 CHMP5Q9NZZ3 219 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 DNAJC12Q9UKB3 198 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 ZMIZ1Q9ULJ6 1067 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 APOBEC2Q9Y235 224 aaKnown RBP10.12□□□□□ -0.79
VRK3-216ENST00000599342 FNDC3AQ9Y2H6 1198 aaKnown RBP10.12□□□□□ -0.79
VRK3-216ENST00000599342 MSRB2Q9Y3D2 182 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 ASCC3Q8N3C0 2202 aaKnown RBP10.12□□□□□ -0.79
VRK3-216ENST00000599342 CNOT1A5YKK6 2376 aaKnown RBP10.12□□□□□ -0.79
VRK3-216ENST00000599342 ITIH6Q6UXX5 1313 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 LRRC72A6NJI9 287 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 TTC34A8MYJ7 566 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 FLRT2O43155 660 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 DAB1O75553 588 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 GRAP2O75791 330 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 RNASEH2AO75792 299 aaKnown RBP10.11□□□□□ -0.79
VRK3-216ENST00000599342 ADH1BP00325 375 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 ERBB2P04626 1255 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 FTH1P19P0C7X4 201 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 PDGFRAP16234 1089 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 PSMD8P48556 350 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 C21orf59P57076 290 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 BPIFB4P59827 614 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 NME3Q13232 169 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 KIF19Q2TAC6 998 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 C9orf64Q5T6V5 341 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 OLFML1Q6UWY5 402 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 CIR1Q86X95 450 aaPredicted RBP10.11□□□□□ -0.79
VRK3-216ENST00000599342 ZDHHC17Q8IUH5 632 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 APCDD1Q8J025 514 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 CHCHD4Q8N4Q1 142 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 C1orf216Q8TAB5 229 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 ZCCHC14Q8WYQ9 949 aaKnown RBP10.11□□□□□ -0.79
VRK3-216ENST00000599342 SKA1Q96BD8 255 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 RPL10LQ96L21 214 aaKnown RBP10.11□□□□□ -0.79
VRK3-216ENST00000599342 TMEM121BQ9BXQ6 578 aaPredicted RBP10.11□□□□□ -0.79
VRK3-216ENST00000599342 ACE2Q9BYF1 805 aaPredicted RBP10.11□□□□□ -0.79
VRK3-216ENST00000599342 SLC25A13Q9UJS0 675 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 PCOLCE2Q9UKZ9 415 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 FZD4Q9ULV1 537 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 STAP1Q9ULZ2 295 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 ANKRD6Q9Y2G4 727 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 PCDHGB2Q9Y5G2 931 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 SNX11Q9Y5W9 270 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 GON4LQ3T8J9 2241 aa10.11□□□□□ -0.79
VRK3-216ENST00000599342 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.1□□□□□ -0.79
VRK3-216ENST00000599342 M0QYT0 321 aa10.1□□□□□ -0.79
VRK3-216ENST00000599342 IL1BP01584 269 aa10.1□□□□□ -0.79
VRK3-216ENST00000599342 C5AR1P21730 350 aa10.1□□□□□ -0.79
VRK3-216ENST00000599342 MZF1P28698 734 aaPredicted RBP10.1□□□□□ -0.79
VRK3-216ENST00000599342 SLC8A1P32418 973 aa10.1□□□□□ -0.79
VRK3-216ENST00000599342 NOS2P35228 1153 aa10.1□□□□□ -0.79
VRK3-216ENST00000599342 NUMBP49757 651 aa10.1□□□□□ -0.79
VRK3-216ENST00000599342 STK19P49842 368 aaPredicted RBP10.1□□□□□ -0.79
VRK3-216ENST00000599342 CCT8P50990 548 aa10.1□□□□□ -0.79
VRK3-216ENST00000599342 GALCP54803 685 aa10.1□□□□□ -0.79
VRK3-216ENST00000599342 RACK1P63244 317 aaKnown RBP10.1□□□□□ -0.79
VRK3-216ENST00000599342 BNC1Q01954 994 aa10.1□□□□□ -0.79
VRK3-216ENST00000599342 SLC6A3Q01959 620 aa10.1□□□□□ -0.79
VRK3-216ENST00000599342 CENPCQ03188 943 aa10.1□□□□□ -0.79
VRK3-216ENST00000599342 ZNF177Q13360 481 aaPredicted RBP10.1□□□□□ -0.79
VRK3-216ENST00000599342 EIF4EBP2Q13542 120 aaPredicted RBP10.1□□□□□ -0.79
VRK3-216ENST00000599342 AUHQ13825 339 aaKnown RBP10.1□□□□□ -0.79
VRK3-216ENST00000599342 RAPGEF1Q13905 1077 aa10.1□□□□□ -0.79
VRK3-216ENST00000599342 ELAVL3Q14576 367 aaKnown RBP10.1□□□□□ -0.79
VRK3-216ENST00000599342 INAVAQ3KP66 663 aa10.1□□□□□ -0.79
VRK3-216ENST00000599342 DPCR1Q3MIW9 517 aa10.1□□□□□ -0.79
VRK3-216ENST00000599342 PTPN20Q4JDL3 420 aa10.1□□□□□ -0.79
VRK3-216ENST00000599342 VWA3BQ502W6 1294 aa10.1□□□□□ -0.79
VRK3-216ENST00000599342 HSP90AA4PQ58FG1 418 aa10.1□□□□□ -0.79
VRK3-216ENST00000599342 NCEH1Q6PIU2 408 aa10.1□□□□□ -0.79
VRK3-216ENST00000599342 LAYNQ6UX15 382 aa10.1□□□□□ -0.79
VRK3-216ENST00000599342 SND1Q7KZF4 910 aaKnown RBP eCLIP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms