RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 FAM118BQ9BPY3 351 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 RAB17Q9H0T7 212 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 S1PR5Q9H228 398 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 MPP6Q9NZW5 540 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 AMACRQ9UHK6 382 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 CDH7Q9ULB5 785 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 HELZP42694 1942 aaKnown RBP15.89■□□□□ 0.13
UPF1-206ENST00000598471 A0A1B0GVM2 712 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 TCAF2A6NFQ2 919 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 RAD51CO43502 376 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 CLDN11O75508 207 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 CYBBP04839 570 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 RHOXF2BP0C7M4 288 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 KCNJ1P48048 391 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 NDST2P52849 883 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 TERF1P54274 439 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 PPP1R7Q15435 360 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 OASLQ15646 514 aaKnown RBP15.88■□□□□ 0.13
UPF1-206ENST00000598471 ZC3H18Q86VM9 953 aaKnown RBP15.88■□□□□ 0.13
UPF1-206ENST00000598471 NLRP14Q86W24 1093 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 LRRC49Q8IUZ0 686 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 CCDC117Q8IWD4 279 aaPredicted RBP15.88■□□□□ 0.13
UPF1-206ENST00000598471 BBS7Q8IWZ6 715 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 CCHCR1Q8TD31 782 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 SMARCD2Q92925 531 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 OLFM3Q96PB7 478 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 QKIQ96PU8 341 aaKnown RBP eCLIP15.88■□□□□ 0.13
UPF1-206ENST00000598471 RHOXF2Q9BQY4 288 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 LRRC1Q9BTT6 524 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 CCL26Q9Y258 94 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 MFHAS1Q9Y4C4 1052 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 ZFP37Q9Y6Q3 630 aaPredicted RBP15.88■□□□□ 0.13
UPF1-206ENST00000598471 NOTCH4Q99466 2003 aa15.88■□□□□ 0.13
UPF1-206ENST00000598471 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.87■□□□□ 0.13
UPF1-206ENST00000598471 BCLAF3A2AJT9 711 aaKnown RBP15.87■□□□□ 0.13
UPF1-206ENST00000598471 TARSL2A2RTX5 802 aaKnown RBP15.87■□□□□ 0.13
UPF1-206ENST00000598471 SGK1O00141 431 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 TTI1O43156 1089 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 CTIFO43310 598 aaKnown RBP15.87■□□□□ 0.13
UPF1-206ENST00000598471 TSPAN3O60637 253 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 STK10O94804 968 aaKnown RBP15.87■□□□□ 0.13
UPF1-206ENST00000598471 SLC34A2O95436 690 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 STIP1P31948 543 aaKnown RBP15.87■□□□□ 0.13
UPF1-206ENST00000598471 DLX2Q07687 328 aaPredicted RBP15.87■□□□□ 0.13
UPF1-206ENST00000598471 GALNT2Q10471 571 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 ZNF177Q13360 481 aaPredicted RBP15.87■□□□□ 0.13
UPF1-206ENST00000598471 ERCC6LQ2NKX8 1250 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 MPPE1Q53F39 396 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 ALFQ53S48 1182 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 SLC45A4Q5BKX6 768 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 C6orf118Q5T5N4 469 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 TFAP2DQ7Z6R9 452 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 JAMLQ86YT9 394 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 UMODL1-AS1Q8N2C9 162 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 GPR161Q8N6U8 529 aaKnown RBP15.87■□□□□ 0.13
UPF1-206ENST00000598471 NPWQ8N729 165 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 TDRD5Q8NAT2 981 aaKnown RBP15.87■□□□□ 0.13
UPF1-206ENST00000598471 TFB1MQ8WVM0 346 aaKnown RBP15.87■□□□□ 0.13
UPF1-206ENST00000598471 RUBCNQ92622 972 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 E2F7Q96AV8 911 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 TMA16Q96EY4 203 aaKnown RBP15.87■□□□□ 0.13
UPF1-206ENST00000598471 MSLNLQ96KJ4 702 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 PRICKLE1Q96MT3 831 aaPredicted RBP15.87■□□□□ 0.13
UPF1-206ENST00000598471 ASB16Q96NS5 453 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 OBP2AQ9NY56 170 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.87■□□□□ 0.136e-7■■■■■ 32.1
UPF1-206ENST00000598471 CD207Q9UJ71 328 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 UTP11Q9Y3A2 253 aaKnown RBP15.87■□□□□ 0.13
UPF1-206ENST00000598471 V9GYY5 206 aaPredicted RBP15.87■□□□□ 0.13
UPF1-206ENST00000598471 C2orf16Q68DN1 1984 aa15.87■□□□□ 0.13
UPF1-206ENST00000598471 ARHGAP42A6NI28 874 aa15.86■□□□□ 0.13
UPF1-206ENST00000598471 TRDMT1O14717 391 aaKnown RBP15.86■□□□□ 0.13
UPF1-206ENST00000598471 SCAMP3O14828 347 aaKnown RBP15.86■□□□□ 0.13
UPF1-206ENST00000598471 MTSS1O43312 755 aa15.86■□□□□ 0.13
UPF1-206ENST00000598471 RAMP2O60895 175 aa15.86■□□□□ 0.13
UPF1-206ENST00000598471 TBL1XO60907 577 aa15.86■□□□□ 0.13
UPF1-206ENST00000598471 CNTN5O94779 1100 aa15.86■□□□□ 0.13
UPF1-206ENST00000598471 HEXIM1O94992 359 aaKnown RBP15.86■□□□□ 0.13
UPF1-206ENST00000598471 MAP3K6O95382 1288 aa15.86■□□□□ 0.13
UPF1-206ENST00000598471 TUBBP07437 444 aa15.86■□□□□ 0.13
UPF1-206ENST00000598471 MCM3P25205 808 aa15.86■□□□□ 0.13
UPF1-206ENST00000598471 OR1E1P30953 314 aa15.86■□□□□ 0.13
UPF1-206ENST00000598471 GBP2P32456 591 aaPredicted RBP15.86■□□□□ 0.13
UPF1-206ENST00000598471 ACTN2P35609 894 aa15.86■□□□□ 0.13
UPF1-206ENST00000598471 LTBRP36941 435 aa15.86■□□□□ 0.13
UPF1-206ENST00000598471 IRAK1P51617 712 aa15.86■□□□□ 0.13
UPF1-206ENST00000598471 YBEYP58557 167 aaPredicted RBP15.86■□□□□ 0.13
UPF1-206ENST00000598471 RPS24P62847 133 aaKnown RBP15.86■□□□□ 0.13
UPF1-206ENST00000598471 SLC10A2Q12908 348 aaPredicted RBP15.86■□□□□ 0.13
UPF1-206ENST00000598471 SKIV2LQ15477 1246 aaKnown RBP15.86■□□□□ 0.13
UPF1-206ENST00000598471 PARP15Q460N3 678 aa15.86■□□□□ 0.13
UPF1-206ENST00000598471 FAM78AQ5JUQ0 283 aa15.86■□□□□ 0.13
UPF1-206ENST00000598471 ARTNQ5T4W7 220 aa15.86■□□□□ 0.13
UPF1-206ENST00000598471 HEATR6Q6AI08 1181 aaKnown RBP15.86■□□□□ 0.13
UPF1-206ENST00000598471 CIR1Q86X95 450 aaPredicted RBP15.86■□□□□ 0.13
UPF1-206ENST00000598471 CFAP52Q8N1V2 620 aa15.86■□□□□ 0.13
UPF1-206ENST00000598471 ATPAF2Q8N5M1 289 aa15.86■□□□□ 0.13
UPF1-206ENST00000598471 ALLCQ8N6M5 410 aa15.86■□□□□ 0.13
UPF1-206ENST00000598471 CCDC89Q8N998 374 aa15.86■□□□□ 0.13
UPF1-206ENST00000598471 CCNYQ8ND76 341 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms