RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 OR2T34Q8NGX1 318 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 LRIG1Q96JA1 1093 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 MRGPRX3Q96LB0 322 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 ELF4Q99607 663 aaPredicted RBP12.97□□□□□ -0.33
TRIM28-212ENST00000597995 NEUROG2Q9H2A3 272 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 STIM2Q9P246 746 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 ADAMTS1Q9UHI8 967 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 INTS6Q9UL03 887 aaKnown RBP12.97□□□□□ -0.33
TRIM28-212ENST00000597995 FAM149AA5PLN7 773 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 FAM47DPA6NHR8 397 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 LRRC72A6NJI9 287 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 P4HA2O15460 535 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 YKT6O15498 198 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 FBXO21O94952 628 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 C1SP09871 688 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 RGS7P49802 495 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 CCR5P51681 352 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 C9orf64Q5T6V5 341 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 NCEH1Q6PIU2 408 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 TMEM270Q6UE05 265 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 DHRS13Q6UX07 377 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 RRAGAQ7L523 313 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 EHBP1Q8NDI1 1231 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 FCRL2Q96LA5 508 aaPredicted RBP12.96□□□□□ -0.33
TRIM28-212ENST00000597995 PRICKLE1Q96MT3 831 aaPredicted RBP12.96□□□□□ -0.33
TRIM28-212ENST00000597995 KREMEN1Q96MU8 473 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 SLC6A18Q96N87 628 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 SERPINB11Q96P15 392 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 NT5C1BQ96P26 610 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 OMDQ99983 421 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 MTG2Q9H4K7 406 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 ERVW-1Q9UQF0 538 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 TLR6Q9Y2C9 796 aa12.96□□□□□ -0.33
TRIM28-212ENST00000597995 COL5A1P20908 1838 aaPredicted RBP12.96□□□□□ -0.33
TRIM28-212ENST00000597995 ITIH6Q6UXX5 1313 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 A0A1W2PP55 124 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 ENC1O14682 589 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 MID1O15344 667 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 MOCS3O95396 460 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 GNA14O95837 355 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 ITGAVP06756 1048 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 CD38P28907 300 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 SLC8A1P32418 973 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 RPS24P62847 133 aaKnown RBP12.95□□□□□ -0.34
TRIM28-212ENST00000597995 IL9RQ01113 521 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 CDH18Q13634 790 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 CCDC157Q569K6 752 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 MS4A13Q5J8X5 152 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 CLEC17AQ6ZS10 378 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 BEND5Q7L4P6 421 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 DHX40Q8IX18 779 aaKnown RBP12.95□□□□□ -0.34
TRIM28-212ENST00000597995 PPM1KQ8N3J5 372 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 CARNMT1Q8N4J0 409 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 SAP25Q8TEE9 199 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 SLC39A13Q96H72 371 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 CLSTN2Q9H4D0 955 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 EBF2Q9HAK2 575 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 SERGEFQ9UGK8 458 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 RWDD2AQ9UIY3 292 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 PCDHB4Q9Y5E5 795 aa12.95□□□□□ -0.34
TRIM28-212ENST00000597995 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.95□□□□□ -0.34
TRIM28-212ENST00000597995 EDDM13A0A1B0GTR0 161 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 A0A1W2PR77 199 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 M0QYV0 167 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 PIK3R2O00459 728 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 SART1O43290 800 aaKnown RBP12.94□□□□□ -0.34
TRIM28-212ENST00000597995 RNASEH2AO75792 299 aaKnown RBP12.94□□□□□ -0.34
TRIM28-212ENST00000597995 LUC7L3O95232 432 aaKnown RBP12.94□□□□□ -0.34
TRIM28-212ENST00000597995 LDOC1O95751 146 aaPredicted RBP12.94□□□□□ -0.34
TRIM28-212ENST00000597995 AFPP02771 609 aaKnown RBP12.94□□□□□ -0.34
TRIM28-212ENST00000597995 WNT1P04628 370 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 FYNP06241 537 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 JUPP14923 745 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 GOT1P17174 413 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 ABCB4P21439 1286 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 C5AR1P21730 350 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 BRD2P25440 801 aaKnown RBP12.94□□□□□ -0.34
TRIM28-212ENST00000597995 HNF1BP35680 557 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 RPL34P49207 117 aaKnown RBP12.94□□□□□ -0.34
TRIM28-212ENST00000597995 ECT2LQ008S8 904 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 KCNJ12Q14500 433 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 SHBQ15464 509 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 DCAF6Q58WW2 860 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 SLC45A4Q5BKX6 768 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 FSCBQ5H9T9 825 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 PITRM1Q5JRX3 1037 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 SND1Q7KZF4 910 aaKnown RBP eCLIP12.94□□□□□ -0.34
TRIM28-212ENST00000597995 GATAD2AQ86YP4 633 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 MMAAQ8IVH4 418 aaKnown RBP12.94□□□□□ -0.34
TRIM28-212ENST00000597995 DQX1Q8TE96 717 aaKnown RBP12.94□□□□□ -0.34
TRIM28-212ENST00000597995 CLEC4CQ8WTT0 213 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 NXPE2Q96DL1 559 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 MYEOVQ96EZ4 313 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 CNDP2Q96KP4 475 aaKnown RBP12.94□□□□□ -0.34
TRIM28-212ENST00000597995 BBC3Q96PG8 261 aaPredicted RBP12.94□□□□□ -0.34
TRIM28-212ENST00000597995 FAM129BQ96TA1 746 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 TRIM62Q9BVG3 475 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 INTS2Q9H0H0 1204 aaKnown RBP12.94□□□□□ -0.34
TRIM28-212ENST00000597995 ERVMER34-1Q9H9K5 563 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 GDF3Q9NR23 364 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms