RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	CEP83	Q9Y592	693 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	ANKRD11	Q6UB99	2663 aa	Predicted RBP	10.9	□□□□□ -0.67
LSM4-205	ENST00000597776	BICDL2	A1A5D9	508 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	SART1	O43290	800 aa	Known RBP	10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	THAP12	O43422	761 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	RNASEH1	O60930	286 aa	Known RBP	10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	GADD45B	O75293	160 aa	Predicted RBP	10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	RNASEH2A	O75792	299 aa	Known RBP	10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	IGLV3-25	P01717	112 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	APOE	P02649	317 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	VAV1	P15498	845 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	TACR2	P21452	398 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	CTSK	P43235	329 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	ACADSB	P45954	432 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	PSMD8	P48556	350 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	STK19	P49842	368 aa	Predicted RBP	10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	CCT8	P50990	548 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	ECT2L	Q008S8	904 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	APBA1	Q02410	837 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	PAK1	Q13153	545 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	TAF5	Q15542	800 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	PRAMEF14	Q5SWL7	426 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	FOXR2	Q6PJQ5	311 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	USP30	Q70CQ3	517 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	CCDC117	Q8IWD4	279 aa	Predicted RBP	10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	ELOA2	Q8IYF1	753 aa	Predicted RBP	10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	STK40	Q8N2I9	435 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	AADAT	Q8N5Z0	425 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	IGSF8	Q969P0	613 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	RPL10L	Q96L21	214 aa	Known RBP	10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	CRACR2A	Q9BSW2	395 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	EBF2	Q9HAK2	575 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	PLXNB3	Q9ULL4	1909 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	LOC400499	M0QZD8	3231 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	CACNA1G	O43497	2377 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	PLXNA2	O75051	1894 aa		10.89	□□□□□ -0.67
LSM4-205	ENST00000597776	SYNJ2BP-COX16	A0A087WUM0	186 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	EDDM13	A0A1B0GTR0	161 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	FAM149A	A5PLN7	773 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	BECN2	A8MW95	431 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	WNT9A	O14904	365 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	MED7	O43513	233 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	DKK1	O94907	266 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	GNA14	O95837	355 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	TRUB2	O95900	331 aa	Known RBP	10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	WNT1	P04628	370 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	SRPRA	P08240	638 aa	Known RBP	10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	GNA15	P30679	374 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	SLC8A1	P32418	973 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	GRK6	P43250	576 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	MARS	P56192	900 aa	Known RBP	10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	C21orf59	P57076	290 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	YWHAZ	P63104	245 aa	Known RBP	10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	PDCL	Q13371	301 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	BECN1	Q14457	450 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	KCNJ12	Q14500	433 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	ARID5B	Q14865	1188 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	SUZ12	Q15022	739 aa	Known RBP	10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	RNF219	Q5W0B1	726 aa	Predicted RBP	10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	C19orf48	Q6RUI8	117 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	LRSAM1	Q6UWE0	723 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	BEND5	Q7L4P6	421 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	TMEM110	Q86TL2	294 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	GATAD2A	Q86YP4	633 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	PASD1	Q8IV76	773 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	KDM1B	Q8NB78	822 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	KNL1	Q8NG31	2342 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	OR2T34	Q8NGX1	318 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	STK32A	Q8WU08	396 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	ZNF606	Q8WXB4	792 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	BTN2A3P	Q96KV6	586 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	FAM129B	Q96TA1	746 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	OMD	Q99983	421 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	TRIM62	Q9BVG3	475 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	ACE2	Q9BYF1	805 aa	Predicted RBP	10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	THAP9	Q9H5L6	903 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	CCDC86	Q9H6F5	360 aa	Known RBP	10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	FAM204A	Q9H8W3	233 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	POPDC2	Q9HBU9	364 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	COX16	Q9P0S2	106 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	KIAA1522	Q9P206	1035 aa	Predicted RBP	10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	SCML1	Q9UN30	329 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	GTF3C3	Q9Y5Q9	886 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	PTPRB	P23467	1997 aa		10.88	□□□□□ -0.67
LSM4-205	ENST00000597776	ITIH6	Q6UXX5	1313 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776		A0A1W2PPC4	97 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	TARSL2	A2RTX5	802 aa	Known RBP	10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	LRRC72	A6NJI9	287 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776		F5H5T6	163 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	CBX4	O00257	560 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	PLK4	O00444	970 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	VILL	O15195	856 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	TNFSF14	O43557	240 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	PCDHGA12	O60330	932 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	MOCS3	O95396	460 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	PDGFRA	P16234	1089 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	SLC9A1	P19634	815 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	MZF1	P28698	734 aa	Predicted RBP	10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	USP8	P40818	1118 aa		10.87	□□□□□ -0.67

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