RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ZSWIM3Q96MP5 696 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 S1PR5Q9H228 398 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 ETNK2Q9NVF9 386 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 THG1LQ9NWX6 298 aaKnown RBP15.67■□□□□ 0.1
TRIM28-209ENST00000597423 OBP2AQ9NY56 170 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 MPP6Q9NZW5 540 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 CLEC1BQ9P126 229 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 CDH7Q9ULB5 785 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 CHD9Q3L8U1 2897 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 MYO7AQ13402 2215 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 ARHGAP42A6NI28 874 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 GREM1O60565 184 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 SLC6A4P31645 630 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 ETFBP38117 255 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 PTGIRP43119 386 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 GALNT2Q10471 571 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 SLC10A2Q12908 348 aaPredicted RBP15.66■□□□□ 0.1
TRIM28-209ENST00000597423 ADGRE1Q14246 886 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 COL19A1Q14993 1142 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 PARP15Q460N3 678 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 HEATR6Q6AI08 1181 aaKnown RBP15.66■□□□□ 0.1
TRIM28-209ENST00000597423 RFWD3Q6PCD5 774 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 GET4Q7L5D6 327 aaPredicted RBP15.66■□□□□ 0.1
TRIM28-209ENST00000597423 SETD3Q86TU7 594 aaPredicted RBP15.66■□□□□ 0.1
TRIM28-209ENST00000597423 NLRP14Q86W24 1093 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 JAMLQ86YT9 394 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 NPAS3Q8IXF0 933 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 MICALL1Q8N3F8 863 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 ALLCQ8N6M5 410 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 ZNF557Q8N988 423 aaPredicted RBP15.66■□□□□ 0.1
TRIM28-209ENST00000597423 TDRD5Q8NAT2 981 aaKnown RBP15.66■□□□□ 0.1
TRIM28-209ENST00000597423 BBOF1Q8ND07 529 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 DDI1Q8WTU0 396 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 FAM118BQ9BPY3 351 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 ERP44Q9BS26 406 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 SMG9Q9H0W8 520 aaKnown RBP15.66■□□□□ 0.1
TRIM28-209ENST00000597423 TRPV4Q9HBA0 871 aa15.66■□□□□ 0.1
TRIM28-209ENST00000597423 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.66■□□□□ 0.1
TRIM28-209ENST00000597423 V9GYY5 206 aaPredicted RBP15.66■□□□□ 0.1
TRIM28-209ENST00000597423 UQCRHLA0A096LP55 91 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 A0A1B0GVM2 712 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 TCAF2A6NFQ2 919 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 TTI1O43156 1089 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 MFSD11O43934 449 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 TSPAN3O60637 253 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 RAMP2O60895 175 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 HEXIM1O94992 359 aaKnown RBP15.65■□□□□ 0.1
TRIM28-209ENST00000597423 KRT14P02533 472 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 UQCRHP07919 91 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 CCNCP24863 283 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 DRG2P55039 364 aaKnown RBP15.65■□□□□ 0.1
TRIM28-209ENST00000597423 ZXDBP98169 803 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 AP1B1Q10567 949 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 POLD3Q15054 466 aaPredicted RBP15.65■□□□□ 0.1
TRIM28-209ENST00000597423 TIGD7Q6NT04 549 aaPredicted RBP15.65■□□□□ 0.1
TRIM28-209ENST00000597423 ZNF783Q6ZMS7 281 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 BBS7Q8IWZ6 715 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 CFAP52Q8N1V2 620 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 NSMCE1Q8WV22 266 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 LRRC45Q96CN5 670 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 OLFM3Q96PB7 478 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 TSGA13Q96PP4 275 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 QKIQ96PU8 341 aaKnown RBP eCLIP15.65■□□□□ 0.1
TRIM28-209ENST00000597423 TMEM121Q9BTD3 319 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 MAGEH1Q9H213 219 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 ZFP14Q9HCL3 533 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 FAM114A2Q9NRY5 505 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 HAUS2Q9NVX0 235 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 CD207Q9UJ71 328 aa15.65■□□□□ 0.1
TRIM28-209ENST00000597423 H0Y626 953 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 DFFAO00273 331 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 NRG2O14511 850 aaPredicted RBP15.64■□□□□ 0.09
TRIM28-209ENST00000597423 KCNN4O15554 427 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 TBL1XO60907 577 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 CNTN5O94779 1100 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 IFNB1P01574 187 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 ADCY8P40145 1251 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 GARSP41250 739 aaKnown RBP15.64■□□□□ 0.09
TRIM28-209ENST00000597423 SLC7A5Q01650 507 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 GUCY2DQ02846 1103 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 PTK6Q13882 451 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 ZNF77Q15935 545 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 ALFQ53S48 1182 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 FAM78AQ5JUQ0 283 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 AFMIDQ63HM1 303 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 TFAP2DQ7Z6R9 452 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 ATPAF2Q8N5M1 289 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 FAM71DQ8N9W8 422 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 HTR3CQ8WXA8 447 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 WBP2Q969T9 261 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 HDAC11Q96DB2 347 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 FAM161BQ96MY7 647 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 ASB16Q96NS5 453 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 VAT1Q99536 393 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 SLC39A8Q9C0K1 460 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 PCDH9Q9HC56 1237 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 EPB41L5Q9HCM4 733 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 ASIC3Q9UHC3 531 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 HPCAL4Q9UM19 191 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 NEU3Q9UQ49 428 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms