RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 ASAH2Q9NR71 780 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 COX16Q9P0S2 106 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 PCSK1NQ9UHG2 260 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 STAP1Q9ULZ2 295 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 PCDHA3Q9Y5H8 950 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 ABCA7Q8IZY2 2146 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 SPAARA0A1B0GVQ0 90 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 A0A1W2PRU2 124 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 LNP1A1A4G5 178 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 ATXN7O15265 892 aaPredicted RBP9.78□□□□□ -0.84
TRIM28-208ENST00000597172 IRAK2O43187 625 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 MSI1O43347 362 aaKnown RBP9.78□□□□□ -0.84
TRIM28-208ENST00000597172 SPOPO43791 374 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 ECI2O75521 394 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 RNF8O76064 485 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 F9P00740 461 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 TUBB4AP04350 444 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 NTRK1P04629 796 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 RARAP10276 462 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 GBP1P32455 592 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 CTNNA1P35221 906 aaKnown RBP9.78□□□□□ -0.84
TRIM28-208ENST00000597172 ATP5C1P36542 298 aaKnown RBP9.78□□□□□ -0.84
TRIM28-208ENST00000597172 TUBP50607 506 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 ZXDBP98169 803 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 DEUP1Q05D60 604 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 NME3Q13232 169 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 RPS6KA1Q15418 735 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 TEAD2Q15562 447 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 ZC3H12AQ5D1E8 599 aaKnown RBP9.78□□□□□ -0.84
TRIM28-208ENST00000597172 C10orf120Q5SQS8 335 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 STXBP5Q5T5C0 1151 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 LRRC38Q5VT99 294 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 PAPD7Q5XG87 772 aaKnown RBP9.78□□□□□ -0.84
TRIM28-208ENST00000597172 SCYL2Q6P3W7 929 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 KLHDC10Q6PID8 442 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 RSRC2Q7L4I2 434 aaKnown RBP9.78□□□□□ -0.84
TRIM28-208ENST00000597172 FAM131BQ86XD5 332 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 CCDC185Q8N715 623 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 ITFG1Q8TB96 612 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 ALG3Q92685 438 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 SLC39A13Q96H72 371 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 ZC3H10Q96K80 434 aaKnown RBP9.78□□□□□ -0.84
TRIM28-208ENST00000597172 ZSWIM3Q96MP5 696 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 CDK5RAP1Q96SZ6 601 aaKnown RBP9.78□□□□□ -0.84
TRIM28-208ENST00000597172 NAPGQ99747 312 aaPredicted RBP9.78□□□□□ -0.84
TRIM28-208ENST00000597172 PLA2G2FQ9BZM2 168 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 ATXN3LQ9H3M9 355 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 ZWILCHQ9H900 591 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 TMPRSS4Q9NRS4 437 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 GKN1Q9NS71 199 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 OLA1Q9NTK5 396 aaKnown RBP9.78□□□□□ -0.84
TRIM28-208ENST00000597172 DDIT4Q9NX09 232 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 MARCH2Q9P0N8 246 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 DNMT3LQ9UJW3 386 aa9.78□□□□□ -0.84
TRIM28-208ENST00000597172 AHCTF1Q8WYP5 2266 aa9.77□□□□□ -0.84
TRIM28-208ENST00000597172 PI4KAP42356 2102 aa9.77□□□□□ -0.84
TRIM28-208ENST00000597172 ZNF638Q14966 1978 aaKnown RBP9.77□□□□□ -0.84
TRIM28-208ENST00000597172 SLC12A8A0AV02 714 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 KCNU1A8MYU2 1149 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 KIF2AO00139 706 aaPredicted RBP9.77□□□□□ -0.85
TRIM28-208ENST00000597172 CDX4O14627 284 aaPredicted RBP9.77□□□□□ -0.85
TRIM28-208ENST00000597172 FGF19O95750 216 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 OLFM2O95897 454 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 IGLV3-27P01718 113 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 HDCP19113 662 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 CDC25CP30307 473 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 HOXC13P31276 330 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 CASQ1P31415 396 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 ADRA1BP35368 520 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 SSR1P43307 286 aaKnown RBP9.77□□□□□ -0.85
TRIM28-208ENST00000597172 ARSEP51690 589 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 AMPD2Q01433 879 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 KCNC4Q03721 635 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 TRIP4Q15650 581 aaPredicted RBP9.77□□□□□ -0.85
TRIM28-208ENST00000597172 CA9Q16790 459 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 BOLA3Q53S33 107 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 KCNT1Q5JUK3 1230 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 ARTNQ5T4W7 220 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 ERMARDQ5T6L9 678 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 PDZD4Q76G19 769 aaPredicted RBP9.77□□□□□ -0.85
TRIM28-208ENST00000597172 ANKS1BQ7Z6G8 1248 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 MIB1Q86YT6 1006 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 RHOT1Q8IXI2 618 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 ARL14EPQ8N8R7 260 aaPredicted RBP9.77□□□□□ -0.85
TRIM28-208ENST00000597172 MAB21L3Q8N8X9 362 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 LEMD2Q8NC56 503 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 UBE2Q2Q8WVN8 375 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 RAPGEF5Q92565 580 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 MRPS31Q92665 395 aaKnown RBP9.77□□□□□ -0.85
TRIM28-208ENST00000597172 WBP2Q969T9 261 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 CRELD1Q96HD1 420 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 ZFRQ96KR1 1074 aaKnown RBP9.77□□□□□ -0.85
TRIM28-208ENST00000597172 FCRL2Q96LA5 508 aaPredicted RBP9.77□□□□□ -0.85
TRIM28-208ENST00000597172 NCAPGQ9BPX3 1015 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 KLF16Q9BXK1 252 aaPredicted RBP9.77□□□□□ -0.85
TRIM28-208ENST00000597172 TASP1Q9H6P5 420 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 BRD9Q9H8M2 597 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 FAM204AQ9H8W3 233 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 GPATCH2LQ9NWQ4 482 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 C2orf42Q9NWW7 574 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms