RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 PLEKHG6Q3KR16 790 aa18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 TTC31Q49AM3 519 aaPredicted RBP18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 C5orf22Q49AR2 442 aa18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 OTUD1Q5VV17 481 aaPredicted RBP18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 IL31Q6EBC2 164 aa18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 FBXL22Q6P050 247 aa18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 LRRC31Q6UY01 552 aa18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 C1orf74Q96LT6 269 aa18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 EDEM2Q9BV94 578 aa18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 TKTL2Q9H0I9 626 aa18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 RTN4Q9NQC3 1192 aaKnown RBP18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 SUSD2Q9UGT4 822 aa18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 TMEM59LQ9UK28 342 aa18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 ITIH6Q6UXX5 1313 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 A0A1W2PQC6 194 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 RNASEH1O60930 286 aaKnown RBP18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 UNGP13051 313 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 HLA-EP13747 358 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 CHRNB2P17787 502 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 SDC4P31431 198 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 FLT3P36888 993 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 PTGER3P43115 390 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 TPMTP51580 245 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 PLK1P53350 603 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 ATXN1P54253 815 aaKnown RBP18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 CDH4P55283 916 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 ECT2LQ008S8 904 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 ZNF177Q13360 481 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 CCDC6Q16204 474 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 HNRNPA1L2Q32P51 320 aaKnown RBP18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 FSCBQ5H9T9 825 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 WDR45BQ5MNZ6 344 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 PHF13Q86YI8 300 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 FRMD1Q8N878 549 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 CADM4Q8NFZ8 388 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 MYEOVQ96EZ4 313 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 TBCBQ99426 244 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 FUCA2Q9BTY2 467 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 NUP58Q9BVL2 599 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 NUSAP1Q9BXS6 441 aaKnown RBP18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 METTL5Q9NRN9 209 aaKnown RBP18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 PILRBQ9UKJ0 227 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 VANGL2Q9ULK5 521 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 ERVW-1Q9UQF0 538 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 HS3ST4Q9Y661 456 aa18.29■□□□□ 0.52
SHKBP1-204ENST00000594862 ABCA7Q8IZY2 2146 aa18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 CEP192Q8TEP8 1941 aa18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 TARSL2A2RTX5 802 aaKnown RBP18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 ANKRD62A6NC57 917 aa18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 DNTTP04053 509 aa18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 DESP17661 470 aa18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 VASPP50552 380 aaPredicted RBP18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 DUOXA1Q1HG43 343 aa18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 CLEC16AQ2KHT3 1053 aa18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 SKOR2Q2VWA4 1001 aaPredicted RBP18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 ARL13BQ3SXY8 428 aa18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 ZNF776Q68DI1 518 aaPredicted RBP18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 LRSAM1Q6UWE0 723 aa18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 ARMCX6Q7L4S7 300 aa18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 ZNF419Q96HQ0 510 aaPredicted RBP18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 HSPA12BQ96MM6 686 aa18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 HAPLN3Q96S86 360 aa18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 AGPAT1Q99943 283 aa18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 C11orf70Q9BRQ4 267 aa18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 SLC6A17Q9H1V8 727 aa18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 PRSS16Q9NQE7 514 aa18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 SEPT11Q9NVA2 429 aaKnown RBP18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 WSB2Q9NYS7 404 aaPredicted RBP18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 ADAM22Q9P0K1 906 aa18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 INTS6Q9UL03 887 aaKnown RBP18.28■□□□□ 0.52
SHKBP1-204ENST00000594862 ACACBO00763 2458 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 A0A1B0GTH6 734 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 EDDM13A0A1B0GTR0 161 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 LNP1A1A4G5 178 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 SYCE3A1L190 88 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 ADCY5O95622 1261 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 SERPINC1P01008 464 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 GNSP15586 552 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 PTPN9P43378 593 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 C1QBPQ07021 282 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 TRIM61Q5EBN2 209 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 STPG1Q5TH74 334 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 CXorf57Q6NSI4 855 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 SLC23A3Q6PIS1 610 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 BNIPLQ7Z465 357 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 C3orf20Q8ND61 904 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 ERLEC1Q96DZ1 483 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 TOE1Q96GM8 510 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 MRGPRX3Q96LB0 322 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 CFAP57Q96MR6 1250 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 EDEM3Q9BZQ6 932 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 SIK2Q9H0K1 926 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 RSPH9Q9H1X1 276 aaPredicted RBP18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 SLC25A13Q9UJS0 675 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 TBC1D30Q9Y2I9 924 aa18.27■□□□□ 0.52
SHKBP1-204ENST00000594862 MEI4A8MW99 385 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 GDF9O60383 454 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 ENDOD1O94919 500 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 KRT3P12035 628 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms