RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 PTPRJQ12913 1337 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 A0A1W2PRU2 124 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 PER2O15055 1255 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 RHOBTB1O94844 696 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 SYF2O95926 243 aaKnown RBP10.06□□□□□ -0.8
LIG3-216ENST00000593099 CDH17Q12864 832 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 TRIP4Q15650 581 aaPredicted RBP10.06□□□□□ -0.8
LIG3-216ENST00000593099 TSNAXIP1Q2TAA8 658 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 ARMC6Q6NXE6 501 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 NYAP1Q6ZVC0 841 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 SLC7A5P2Q9GIP4 190 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 ZDHHC6Q9H6R6 413 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 PLK2Q9NYY3 685 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 LAMB2P55268 1798 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 CYP4F8P98187 520 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 ZSCAN26Q16670 478 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 CRELD2Q6UXH1 353 aaPredicted RBP10.06□□□□□ -0.8
LIG3-216ENST00000593099 NLRP9Q7RTR0 991 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 MRPL10Q7Z7H8 261 aaKnown RBP10.06□□□□□ -0.8
LIG3-216ENST00000593099 CDC26Q8NHZ8 85 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 PHOSPHO2Q8TCD6 241 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 PLD4Q96BZ4 506 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 CHMP6Q96FZ7 201 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 SLC13A1Q9BZW2 595 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 SENP1Q9P0U3 644 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 BTNL10A8MVZ5 291 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 TTC4O95801 387 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 STMN1P16949 149 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 TACR2P21452 398 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 HOXD13P35453 343 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 PTPN9P43378 593 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 SLC12A1Q13621 1099 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 MORF4L2Q15014 288 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 UPP1Q16831 310 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 UGT3A1Q6NUS8 523 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 LRRC15Q8TF66 581 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 TLR10Q9BXR5 811 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 PALMDQ9NP74 551 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 SIX4Q9UIU6 781 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 RAB23Q9ULC3 237 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 INSL5Q9Y5Q6 135 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 ALDH1A2O94788 518 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 GOT1P17174 413 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 DDX6P26196 483 aaKnown RBP eCLIP10.06□□□□□ -0.8
LIG3-216ENST00000593099 RABGGTBP53611 331 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 JAM2P57087 298 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 KYNUQ16719 465 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 SLC45A4Q5BKX6 768 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 CLEC20AQ6ZU45 233 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 USP45Q70EL2 814 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 OSTM1Q86WC4 334 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 RGL4Q8IZJ4 473 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 ARHGAP24Q8N264 748 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 ARL10Q8N8L6 244 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 CFAP61Q8NHU2 1237 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 TEKT4Q8WW24 435 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 C8orf48Q96LL4 319 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 SRPK1Q96SB4 655 aaKnown RBP10.06□□□□□ -0.8
LIG3-216ENST00000593099 CENPKQ9BS16 269 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 TM6SF2Q9BZW4 377 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 CLPBQ9H078 707 aa10.06□□□□□ -0.8
LIG3-216ENST00000593099 GRM6O15303 877 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 INPPL1O15357 1258 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 CDH16O75309 829 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 MTHFRP42898 656 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 GAD2Q05329 585 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 AAK1Q2M2I8 961 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 TTC39BQ5VTQ0 682 aaPredicted RBP10.05□□□□□ -0.8
LIG3-216ENST00000593099 SCAMP5Q8TAC9 235 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 GRIN3AQ8TCU5 1115 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 ARHGEF2Q92974 986 aaKnown RBP10.05□□□□□ -0.8
LIG3-216ENST00000593099 MCUR1Q96AQ8 359 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 ZNF333Q96JL9 665 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 DDX23Q9BUQ8 820 aaKnown RBP10.05□□□□□ -0.8
LIG3-216ENST00000593099 BCO2Q9BYV7 579 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 PRDM12Q9H4Q4 367 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 ATP13A3Q9H7F0 1226 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 MPP6Q9NZW5 540 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 HEATR9A2RTY3 570 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 MTMR11A4FU01 709 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 PAPSS1O43252 624 aaPredicted RBP10.05□□□□□ -0.8
LIG3-216ENST00000593099 NDUFS2O75306 463 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 CA3P07451 260 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 BRAFP15056 766 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 HTR7P34969 479 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 CARSP49589 748 aaKnown RBP10.05□□□□□ -0.8
LIG3-216ENST00000593099 WDR5P61964 334 aaKnown RBP10.05□□□□□ -0.8
LIG3-216ENST00000593099 UBE3AQ05086 875 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 ACOX1Q15067 660 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 ATP13A4Q4VNC1 1196 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 MARCH8Q5T0T0 291 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 TAC4Q86UU9 113 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 CACNA2D3Q8IZS8 1091 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 CFAP52Q8N1V2 620 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 ZCCHC2Q9C0B9 1178 aaKnown RBP10.05□□□□□ -0.8
LIG3-216ENST00000593099 SCN9AQ15858 1988 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 CCDC195A0A1B0GUA6 201 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 MAGEB16A2A368 324 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 CES2O00748 559 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 IL1BP01584 269 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms