RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 IL1BP01584 269 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 EPHB2P29323 1055 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 CYP2C18P33260 490 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 SKIV2L2P42285 1042 aaKnown RBP20.2■□□□□ 0.82
CLIP3-206ENST00000593074 SERPINB4P48594 390 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 NAB1Q13506 487 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 TIFABQ6ZNK6 161 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 SPATA2LQ8IUW3 424 aaPredicted RBP20.2■□□□□ 0.82
CLIP3-206ENST00000593074 COLGALT2Q8IYK4 626 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 THOC1Q96FV9 657 aaKnown RBP20.2■□□□□ 0.82
CLIP3-206ENST00000593074 FAM193BQ96PV7 902 aaPredicted RBP20.2■□□□□ 0.82
CLIP3-206ENST00000593074 OSBPL2Q9H1P3 480 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 GBA3Q9H227 469 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 SYBUQ9NX95 663 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 KLF11O14901 512 aa20.19■□□□□ 0.82
CLIP3-206ENST00000593074 IRAK2O43187 625 aa20.19■□□□□ 0.82
CLIP3-206ENST00000593074 B4GALT3O60512 393 aa20.19■□□□□ 0.82
CLIP3-206ENST00000593074 OR1G1P47890 313 aa20.19■□□□□ 0.82
CLIP3-206ENST00000593074 VEGFBP49765 207 aa20.19■□□□□ 0.82
CLIP3-206ENST00000593074 SLC5A3P53794 718 aa20.19■□□□□ 0.82
CLIP3-206ENST00000593074 C4orf50Q6ZRC1 276 aa20.19■□□□□ 0.82
CLIP3-206ENST00000593074 ZNF296Q8WUU4 475 aaPredicted RBP20.19■□□□□ 0.82
CLIP3-206ENST00000593074 DPF3Q92784 378 aa20.19■□□□□ 0.82
CLIP3-206ENST00000593074 TBC1D13Q9NVG8 400 aa20.19■□□□□ 0.82
CLIP3-206ENST00000593074 PIH1D1Q9NWS0 290 aaKnown RBP20.19■□□□□ 0.82
CLIP3-206ENST00000593074 ARHGEF38Q9NXL2 777 aa20.19■□□□□ 0.82
CLIP3-206ENST00000593074 CHKBQ9Y259 395 aa20.19■□□□□ 0.82
CLIP3-206ENST00000593074 TNFRSF10BO14763 440 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 DCTN3O75935 186 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 TROVE2P10155 538 aaKnown RBP eCLIP20.18■□□□□ 0.82
CLIP3-206ENST00000593074 COL6A1P12109 1028 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 CCNB1P14635 433 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 SETDB1Q15047 1291 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 ZNF449Q6P9G9 518 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 UNC5BQ8IZJ1 945 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 VAT1Q99536 393 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 TSSK1BQ9BXA7 367 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 SEZ6LQ9BYH1 1024 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 TMEM161AQ9NX61 479 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 TRHDEQ9UKU6 1024 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 ERI2A8K979 691 aaKnown RBP20.18■□□□□ 0.82
CLIP3-206ENST00000593074 TMEM189-UBE2V1I3L0A0 370 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 ALDH3A1P30838 453 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 CDK7P50613 346 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 BFSP2Q13515 415 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 MROH9Q5TGP6 573 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 KCTD11Q693B1 232 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 CDKL2Q92772 493 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 MYLK2Q9H1R3 596 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 SMOC2Q9H3U7 446 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 ALG13Q9NP73 1137 aaKnown RBP20.18■□□□□ 0.82
CLIP3-206ENST00000593074 NPHS2Q9NP85 383 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 ABCC13Q9NSE7 274 aa20.18■□□□□ 0.82
CLIP3-206ENST00000593074 C2CD2LO14523 706 aa20.17■□□□□ 0.82
CLIP3-206ENST00000593074 ZBTB24O43167 697 aaPredicted RBP20.17■□□□□ 0.82
CLIP3-206ENST00000593074 CD68P34810 354 aaPredicted RBP20.17■□□□□ 0.82
CLIP3-206ENST00000593074 ZNF33AQ06730 810 aa20.17■□□□□ 0.82
CLIP3-206ENST00000593074 ZBTB17Q13105 803 aa20.17■□□□□ 0.82
CLIP3-206ENST00000593074 BRMS1LQ5PSV4 323 aa20.17■□□□□ 0.82
CLIP3-206ENST00000593074 RNF34Q969K3 372 aa20.17■□□□□ 0.82
CLIP3-206ENST00000593074 ERP27Q96DN0 273 aa20.17■□□□□ 0.82
CLIP3-206ENST00000593074 LRRC37BQ96QE4 947 aa20.17■□□□□ 0.82
CLIP3-206ENST00000593074 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.17■□□□□ 0.82
CLIP3-206ENST00000593074 UNC5CO95185 931 aa20.17■□□□□ 0.82
CLIP3-206ENST00000593074 OAZ2O95190 189 aa20.17■□□□□ 0.82
CLIP3-206ENST00000593074 CRHR1P34998 444 aa20.17■□□□□ 0.82
CLIP3-206ENST00000593074 GRIK1P39086 918 aa20.17■□□□□ 0.82
CLIP3-206ENST00000593074 TEX44Q53QW1 395 aa20.17■□□□□ 0.82
CLIP3-206ENST00000593074 PACS1Q6VY07 963 aa20.17■□□□□ 0.82
CLIP3-206ENST00000593074 ASRGL1Q7L266 308 aa20.17■□□□□ 0.82
CLIP3-206ENST00000593074 ZSCAN18Q8TBC5 510 aaPredicted RBP20.17■□□□□ 0.82
CLIP3-206ENST00000593074 HAPLN3Q96S86 360 aa20.17■□□□□ 0.82
CLIP3-206ENST00000593074 CASS4Q9NQ75 786 aa20.17■□□□□ 0.82
CLIP3-206ENST00000593074 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.16■□□□□ 0.82
CLIP3-206ENST00000593074 ENPP3O14638 875 aa20.16■□□□□ 0.82
CLIP3-206ENST00000593074 MGRN1O60291 552 aa20.16■□□□□ 0.82
CLIP3-206ENST00000593074 TADA2AO75478 443 aa20.16■□□□□ 0.82
CLIP3-206ENST00000593074 TGDSO95455 350 aa20.16■□□□□ 0.82
CLIP3-206ENST00000593074 POLBP06746 335 aa20.16■□□□□ 0.82
CLIP3-206ENST00000593074 BGNP21810 368 aa20.16■□□□□ 0.82
CLIP3-206ENST00000593074 HOXC13P31276 330 aa20.16■□□□□ 0.82
CLIP3-206ENST00000593074 HTR7P34969 479 aa20.16■□□□□ 0.82
CLIP3-206ENST00000593074 ELF3P78545 371 aaPredicted RBP20.16■□□□□ 0.82
CLIP3-206ENST00000593074 PLEKHG4Q58EX7 1191 aa20.16■□□□□ 0.82
CLIP3-206ENST00000593074 SPANXN3Q5MJ09 141 aa20.16■□□□□ 0.82
CLIP3-206ENST00000593074 SPDYAQ5MJ70 313 aa20.16■□□□□ 0.82
CLIP3-206ENST00000593074 ITPRIPL1Q6GPH6 555 aa20.16■□□□□ 0.82
CLIP3-206ENST00000593074 OR52K1Q8NGK4 314 aa20.16■□□□□ 0.82
CLIP3-206ENST00000593074 ELAC1Q9H777 363 aaKnown RBP20.16■□□□□ 0.82
CLIP3-206ENST00000593074 PCMTD2Q9NV79 361 aa20.16■□□□□ 0.82
CLIP3-206ENST00000593074 DNAJB4Q9UDY4 337 aa20.16■□□□□ 0.82
CLIP3-206ENST00000593074 PRG3Q9Y2Y8 225 aaPredicted RBP20.16■□□□□ 0.82
CLIP3-206ENST00000593074 HGSO14964 777 aaPredicted RBP20.15■□□□□ 0.82
CLIP3-206ENST00000593074 OLIG2Q13516 323 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 SLC39A12Q504Y0 691 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 MANEALQ5VSG8 457 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 DCP1BQ8IZD4 617 aaKnown RBP20.15■□□□□ 0.82
CLIP3-206ENST00000593074 ABI1Q8IZP0 508 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 NDUFAF2Q8N183 169 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 DBF4BQ8NFT6 615 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms