RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	BLMH	Q13867	455 aa		11.91	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	C15orf59	Q2T9L4	293 aa	Predicted RBP	11.91	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	TRNP1	Q6NT89	227 aa		11.91	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	AGGF1	Q8N302	714 aa	eCLIP	11.91	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	KCTD6	Q8NC69	237 aa		11.91	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	TMEM35B	Q8NCS4	154 aa		11.91	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	TRMT2B	Q96GJ1	504 aa	Known RBP	11.91	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	GORASP1	Q9BQQ3	440 aa		11.91	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ZFAT	Q9P243	1243 aa		11.91	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SLC17A6	Q9P2U8	582 aa		11.91	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	HEY1	Q9Y5J3	304 aa		11.91	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	LAMA3	Q16787	3333 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	MEI4	A8MW99	385 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	OGT	O15294	1046 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	PRPF4	O43172	522 aa	Known RBP eCLIP	11.9	□□□□□ -0.5	3e-6	■■□□□ 13.5
CDK5RAP3-231	ENST00000584063	USP1	O94782	785 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	C22orf31	O95567	290 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ITGB3	P05106	788 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	FES	P07332	822 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	MMP3	P08254	477 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	TROVE2	P10155	538 aa	Known RBP eCLIP	11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SLC26A2	P50443	739 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SLC12A2	P55011	1212 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	RAC1	P63000	192 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	MXRA7	P84157	204 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ZNF200	P98182	395 aa	Predicted RBP	11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SLC25A11	Q02978	314 aa	Known RBP	11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	THOC5	Q13769	683 aa	Known RBP	11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	GRIK4	Q16099	956 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	DUOXA2	Q1HG44	320 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	TMTC4	Q5T4D3	741 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SCYL2	Q6P3W7	929 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	TRIM72	Q6ZMU5	477 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	TLK2	Q86UE8	772 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	WDR49	Q8IV35	697 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	HIPK4	Q8NE63	616 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	DNAJC9	Q8WXX5	260 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	PGLYRP2	Q96PD5	576 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	PEBP4	Q96S96	227 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	NMUR2	Q9GZQ4	415 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ELOVL4	Q9GZR5	314 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	MGAM	O43451	1857 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CXorf49	A8MYA2	514 aa	Predicted RBP	11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063		H3BRJ5	948 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	C6orf222	P0C671	652 aa	Predicted RBP	11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	UBTFL6	P0CB48	400 aa	Predicted RBP	11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ZCCHC18	P0CG32	403 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	KRT3	P12035	628 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	PTPN4	P29074	926 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	RGS7	P49802	495 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	LIMK1	P53667	647 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ARL4C	P56559	192 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	EIF3E	P60228	445 aa	Known RBP	11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	GNA13	Q14344	377 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	MORF4L2	Q15014	288 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CTC1	Q2NKJ3	1217 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SNX30	Q5VWJ9	437 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	C12orf29	Q8N999	325 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	C1orf127	Q8N9H9	656 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	APOL6	Q9BWW8	343 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	B3GNT4	Q9C0J1	378 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	KATNBL1	Q9H079	304 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CDT1	Q9H211	546 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ATPIF1	Q9UII2	106 aa		11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SMG5	Q9UPR3	1016 aa	Known RBP	11.9	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	TMEM247	A6NEH6	219 aa		11.9	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	SLC15A5	A6NIM6	579 aa		11.9	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	SMIM24	O75264	130 aa		11.9	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	TBX10	O75333	385 aa		11.9	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	BAG2	O95816	211 aa		11.9	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	ESRRA	P11474	423 aa	Predicted RBP	11.9	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	CYP3A5	P20815	502 aa		11.9	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	NOS2	P35228	1153 aa		11.9	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	C4orf50	Q6ZRC1	276 aa		11.9	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	TBC1D21	Q8IYX1	336 aa		11.9	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	PDCD7	Q8N8D1	485 aa	Known RBP	11.9	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	ZBTB8B	Q8NAP8	495 aa	Predicted RBP	11.9	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	SPATA18	Q8TC71	538 aa		11.9	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	DCAKD	Q8WVC6	231 aa		11.9	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	TTC1	Q99614	292 aa		11.9	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	TMEM134	Q9H6X4	195 aa		11.9	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	C12orf49	Q9H741	205 aa		11.9	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	IL1RAPL1	Q9NZN1	696 aa		11.9	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	ACTL7B	Q9Y614	415 aa		11.9	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	SFTPC	P11686	197 aa		11.89	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	RASSF2	P50749	326 aa		11.89	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	ALDH18A1	P54886	795 aa	Known RBP	11.89	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	DSTN	P60981	165 aa		11.89	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	LMNB2	Q03252	620 aa		11.89	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	LRRC74A	Q0VAA2	488 aa		11.89	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	DPYS	Q14117	519 aa		11.89	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	CES4A	Q5XG92	561 aa		11.89	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	JADE1	Q6IE81	842 aa		11.89	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	DARS2	Q6PI48	645 aa	Known RBP	11.89	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	UNC5B	Q8IZJ1	945 aa		11.89	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	ZNF276	Q8N554	614 aa		11.89	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	GOLM1	Q8NBJ4	401 aa		11.89	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	CCDC110	Q8TBZ0	833 aa		11.89	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	VCPIP1	Q96JH7	1222 aa		11.89	□□□□□ -0.51
CDK5RAP3-231	ENST00000584063	TRIM55	Q9BYV6	548 aa		11.89	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms