RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 MATKP42679 507 aa21.16■□□□□ 0.98
SHMT1-209ENST00000582653 AFF3P51826 1226 aaKnown RBP21.16■□□□□ 0.98
SHMT1-209ENST00000582653 CDK17Q00537 523 aa21.16■□□□□ 0.98
SHMT1-209ENST00000582653 HLA-BQ31612 363 aa21.16■□□□□ 0.98
SHMT1-209ENST00000582653 HNRNPA1L2Q32P51 320 aaKnown RBP21.16■□□□□ 0.98
SHMT1-209ENST00000582653 PITRM1Q5JRX3 1037 aa21.16■□□□□ 0.98
SHMT1-209ENST00000582653 EFHC1Q5JVL4 640 aa21.16■□□□□ 0.98
SHMT1-209ENST00000582653 RAB44Q7Z6P3 723 aaPredicted RBP21.16■□□□□ 0.98
SHMT1-209ENST00000582653 CIR1Q86X95 450 aaPredicted RBP21.16■□□□□ 0.98
SHMT1-209ENST00000582653 CHCHD4Q8N4Q1 142 aa21.16■□□□□ 0.98
SHMT1-209ENST00000582653 BIRC7Q96CA5 298 aa21.16■□□□□ 0.98
SHMT1-209ENST00000582653 MRGPRX3Q96LB0 322 aa21.16■□□□□ 0.98
SHMT1-209ENST00000582653 IL21RQ9HBE5 538 aa21.16■□□□□ 0.98
SHMT1-209ENST00000582653 DDIT4Q9NX09 232 aa21.16■□□□□ 0.98
SHMT1-209ENST00000582653 KIAA1522Q9P206 1035 aaPredicted RBP21.16■□□□□ 0.98
SHMT1-209ENST00000582653 DACH1Q9UI36 760 aa21.16■□□□□ 0.98
SHMT1-209ENST00000582653 KLK13Q9UKR3 277 aa21.16■□□□□ 0.98
SHMT1-209ENST00000582653 NCKAP1Q9Y2A7 1128 aa21.16■□□□□ 0.98
SHMT1-209ENST00000582653 CACNA1EQ15878 2313 aa21.16■□□□□ 0.98
SHMT1-209ENST00000582653 TARSL2A2RTX5 802 aaKnown RBP21.15■□□□□ 0.98
SHMT1-209ENST00000582653 CBFA2T3O75081 653 aa21.15■□□□□ 0.98
SHMT1-209ENST00000582653 GLI1P08151 1106 aa21.15■□□□□ 0.98
SHMT1-209ENST00000582653 SRPRAP08240 638 aaKnown RBP21.15■□□□□ 0.98
SHMT1-209ENST00000582653 CSNK1EP49674 416 aaKnown RBP21.15■□□□□ 0.98
SHMT1-209ENST00000582653 RAPGEF1Q13905 1077 aa21.15■□□□□ 0.98
SHMT1-209ENST00000582653 KCNJ12Q14500 433 aa21.15■□□□□ 0.98
SHMT1-209ENST00000582653 DRAP1Q14919 205 aaPredicted RBP21.15■□□□□ 0.98
SHMT1-209ENST00000582653 TTC31Q49AM3 519 aaPredicted RBP21.15■□□□□ 0.98
SHMT1-209ENST00000582653 PTPN20Q4JDL3 420 aa21.15■□□□□ 0.98
SHMT1-209ENST00000582653 ZNF776Q68DI1 518 aaPredicted RBP21.15■□□□□ 0.98
SHMT1-209ENST00000582653 SMYD5Q6GMV2 418 aa21.15■□□□□ 0.98
SHMT1-209ENST00000582653 OLFML1Q6UWY5 402 aa21.15■□□□□ 0.98
SHMT1-209ENST00000582653 C11orf57Q6ZUT1 292 aaPredicted RBP21.15■□□□□ 0.98
SHMT1-209ENST00000582653 USP30Q70CQ3 517 aa21.15■□□□□ 0.98
SHMT1-209ENST00000582653 FAM71AQ8IYT1 594 aa21.15■□□□□ 0.98
SHMT1-209ENST00000582653 APCDD1Q8J025 514 aa21.15■□□□□ 0.98
SHMT1-209ENST00000582653 ATP6V0D2Q8N8Y2 350 aa21.15■□□□□ 0.98
SHMT1-209ENST00000582653 RNF34Q969K3 372 aa21.15■□□□□ 0.98
SHMT1-209ENST00000582653 PRMT1Q99873 361 aaKnown RBP21.15■□□□□ 0.98
SHMT1-209ENST00000582653 TM7SF3Q9NS93 570 aa21.15■□□□□ 0.98
SHMT1-209ENST00000582653 ASNSD1Q9NWL6 643 aa21.15■□□□□ 0.98
SHMT1-209ENST00000582653 PCOLCE2Q9UKZ9 415 aa21.15■□□□□ 0.98
SHMT1-209ENST00000582653 PCDHGB2Q9Y5G2 931 aa21.15■□□□□ 0.98
SHMT1-209ENST00000582653 FHOD1Q9Y613 1164 aa21.15■□□□□ 0.98
SHMT1-209ENST00000582653 CFAP47Q6ZTR5 3102 aa21.14■□□□□ 0.98
SHMT1-209ENST00000582653 HSF2BPO75031 334 aa21.14■□□□□ 0.97
SHMT1-209ENST00000582653 MOCS3O95396 460 aa21.14■□□□□ 0.97
SHMT1-209ENST00000582653 SFSWAPQ12872 951 aaKnown RBP21.14■□□□□ 0.97
SHMT1-209ENST00000582653 KLHDC7AQ5VTJ3 777 aa21.14■□□□□ 0.97
SHMT1-209ENST00000582653 GLRX5Q86SX6 157 aa21.14■□□□□ 0.97
SHMT1-209ENST00000582653 DHX40Q8IX18 779 aaKnown RBP21.14■□□□□ 0.97
SHMT1-209ENST00000582653 ADAMTS14Q8WXS8 1223 aa21.14■□□□□ 0.97
SHMT1-209ENST00000582653 SNX19Q92543 992 aa21.14■□□□□ 0.97
SHMT1-209ENST00000582653 NOX5Q96PH1 765 aa21.14■□□□□ 0.97
SHMT1-209ENST00000582653 SYNCQ9H7C4 482 aa21.14■□□□□ 0.97
SHMT1-209ENST00000582653 SLC12A6Q9UHW9 1150 aa21.14■□□□□ 0.97
SHMT1-209ENST00000582653 ERVW-1Q9UQF0 538 aa21.14■□□□□ 0.97
SHMT1-209ENST00000582653 SLCO1B1Q9Y6L6 691 aa21.14■□□□□ 0.97
SHMT1-209ENST00000582653 A0A1B0GVT2 93 aa21.13■□□□□ 0.97
SHMT1-209ENST00000582653 TTC34A8MYJ7 566 aa21.13■□□□□ 0.97
SHMT1-209ENST00000582653 F5H5T6 163 aa21.13■□□□□ 0.97
SHMT1-209ENST00000582653 RNASEH1O60930 286 aaKnown RBP21.13■□□□□ 0.97
SHMT1-209ENST00000582653 SIN3BO75182 1162 aa21.13■□□□□ 0.97
SHMT1-209ENST00000582653 ABCB4P21439 1286 aa21.13■□□□□ 0.97
SHMT1-209ENST00000582653 CD27P26842 260 aa21.13■□□□□ 0.97
SHMT1-209ENST00000582653 CCR1P32246 355 aa21.13■□□□□ 0.97
SHMT1-209ENST00000582653 SLC6A3Q01959 620 aa21.13■□□□□ 0.97
SHMT1-209ENST00000582653 NME3Q13232 169 aa21.13■□□□□ 0.97
SHMT1-209ENST00000582653 TEAD4Q15561 434 aa21.13■□□□□ 0.97
SHMT1-209ENST00000582653 TCP11X2Q5H9J9 407 aa21.13■□□□□ 0.97
SHMT1-209ENST00000582653 C9orf64Q5T6V5 341 aa21.13■□□□□ 0.97
SHMT1-209ENST00000582653 CLEC17AQ6ZS10 378 aa21.13■□□□□ 0.97
SHMT1-209ENST00000582653 SETD7Q8WTS6 366 aaKnown RBP21.13■□□□□ 0.97
SHMT1-209ENST00000582653 RPL10LQ96L21 214 aaKnown RBP21.13■□□□□ 0.97
SHMT1-209ENST00000582653 PABPC3Q9H361 631 aaKnown RBP21.13■□□□□ 0.97
SHMT1-209ENST00000582653 TM9SF3Q9HD45 589 aa21.13■□□□□ 0.97
SHMT1-209ENST00000582653 FBXL12Q9NXK8 326 aa21.13■□□□□ 0.97
SHMT1-209ENST00000582653 TAB2Q9NYJ8 693 aa21.13■□□□□ 0.97
SHMT1-209ENST00000582653 SLCO3A1Q9UIG8 710 aa21.13■□□□□ 0.97
SHMT1-209ENST00000582653 FTH1P19P0C7X4 201 aa21.12■□□□□ 0.97
SHMT1-209ENST00000582653 CYP11B1P15538 503 aa21.12■□□□□ 0.97
SHMT1-209ENST00000582653 ANP32AP39687 249 aaKnown RBP21.12■□□□□ 0.97
SHMT1-209ENST00000582653 GRIA4P48058 902 aa21.12■□□□□ 0.97
SHMT1-209ENST00000582653 BPIFB4P59827 614 aa21.12■□□□□ 0.97
SHMT1-209ENST00000582653 ECT2LQ008S8 904 aa21.12■□□□□ 0.97
SHMT1-209ENST00000582653 SLC12A1Q13621 1099 aa21.12■□□□□ 0.97
SHMT1-209ENST00000582653 SUZ12Q15022 739 aaKnown RBP21.12■□□□□ 0.97
SHMT1-209ENST00000582653 KIF19Q2TAC6 998 aa21.12■□□□□ 0.97
SHMT1-209ENST00000582653 TAF3Q5VWG9 929 aa21.12■□□□□ 0.97
SHMT1-209ENST00000582653 CCAR2Q8N163 923 aaKnown RBP21.12■□□□□ 0.97
SHMT1-209ENST00000582653 IGSF8Q969P0 613 aa21.12■□□□□ 0.97
SHMT1-209ENST00000582653 PDCL3Q9H2J4 239 aa21.12■□□□□ 0.97
SHMT1-209ENST00000582653 APOBEC2Q9Y235 224 aaKnown RBP21.12■□□□□ 0.97
SHMT1-209ENST00000582653 ANKRD6Q9Y2G4 727 aa21.12■□□□□ 0.97
SHMT1-209ENST00000582653 FNDC3AQ9Y2H6 1198 aaKnown RBP21.12■□□□□ 0.97
SHMT1-209ENST00000582653 CEP83Q9Y592 693 aa21.12■□□□□ 0.97
SHMT1-209ENST00000582653 M0QYT0 321 aa21.11■□□□□ 0.97
SHMT1-209ENST00000582653 FSBPO95073 299 aa21.11■□□□□ 0.97
SHMT1-209ENST00000582653 SLC2A3P11169 496 aa21.11■□□□□ 0.97
SHMT1-209ENST00000582653 PDGFRAP16234 1089 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms