RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 CDC23Q9UJX2 597 aa10.74□□□□□ -0.69
SS18-221ENST00000582448 NUB1Q9Y5A7 615 aa10.74□□□□□ -0.69
SS18-221ENST00000582448 INSL5Q9Y5Q6 135 aa10.74□□□□□ -0.69
SS18-221ENST00000582448 SAR1BQ9Y6B6 198 aa10.74□□□□□ -0.69
SS18-221ENST00000582448 NOTCH4Q99466 2003 aa10.74□□□□□ -0.69
SS18-221ENST00000582448 PATJQ8NI35 1801 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 SLC38A8A6NNN8 435 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 TMCO5BA8MYB1 307 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 BUB1O43683 1085 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 ABLIM3O94929 683 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 ITGB3P05106 788 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 HOXC13P31276 330 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 GALCP54803 685 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 TNNC1P63316 161 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 TEAD2Q15562 447 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 SLC10A6Q3KNW5 377 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 N4BP2L1Q5TBK1 243 aaPredicted RBP10.73□□□□□ -0.69
SS18-221ENST00000582448 TAF3Q5VWG9 929 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 SLC8B1Q6J4K2 584 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 LRFN4Q6PJG9 635 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 TMEM270Q6UE05 265 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 SLC47A2Q86VL8 602 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 RBBP8NLQ8NC74 664 aaPredicted RBP10.73□□□□□ -0.69
SS18-221ENST00000582448 DEPDC1BQ8WUY9 529 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 UBE2Q2Q8WVN8 375 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 DUSP23Q9BVJ7 150 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 FAM124BQ9H5Z6 455 aaPredicted RBP10.73□□□□□ -0.69
SS18-221ENST00000582448 DPP3Q9NY33 737 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 NOCTQ9UK39 431 aaKnown RBP10.73□□□□□ -0.69
SS18-221ENST00000582448 ANGPTL2Q9UKU9 493 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 TFR2Q9UP52 801 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 CEP83Q9Y592 693 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 PCDHB5Q9Y5E4 795 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 MRFAP1Q9Y605 127 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 DUSP10Q9Y6W6 482 aa10.73□□□□□ -0.69
SS18-221ENST00000582448 THAP12O43422 761 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 MED7O43513 233 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 LRP3O75074 770 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 MOSPD3O75425 235 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 CST3P01034 146 aaPredicted RBP10.72□□□□□ -0.69
SS18-221ENST00000582448 FTLP02792 175 aaPredicted RBP10.72□□□□□ -0.69
SS18-221ENST00000582448 MYBL1P10243 752 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 TCP1P17987 556 aaKnown RBP10.72□□□□□ -0.69
SS18-221ENST00000582448 ABCB4P21439 1286 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 NSFP46459 744 aaKnown RBP10.72□□□□□ -0.69
SS18-221ENST00000582448 LRRC32Q14392 662 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 SF3A2Q15428 464 aaKnown RBP10.72□□□□□ -0.69
SS18-221ENST00000582448 WDR72Q3MJ13 1102 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 CYP27C1Q4G0S4 372 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 ZBTB37Q5TC79 503 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 CCDC181Q5TID7 509 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 PAPD7Q5XG87 772 aaKnown RBP10.72□□□□□ -0.69
SS18-221ENST00000582448 SCARA3Q6AZY7 606 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 SPOPLQ6IQ16 392 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 Q6ZS52 159 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 NOP9Q86U38 636 aaKnown RBP10.72□□□□□ -0.69
SS18-221ENST00000582448 LONP2Q86WA8 852 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 MFSD6LQ8IWD5 586 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 EFCAB13Q8IY85 973 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 TCEAL8Q8IYN2 117 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 SPEM1Q8N4L4 309 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 FAM181AQ8N9Y4 354 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 SLC20A1Q8WUM9 679 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 RFFLQ8WZ73 363 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 UBXN4Q92575 508 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 HPDLQ96IR7 371 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 PGLYRP2Q96PD5 576 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 SYT11Q9BT88 431 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 IER2Q9BTL4 223 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 PACSIN1Q9BY11 444 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 ARRDC1-AS1Q9H2J1 176 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 CYP3A43Q9HB55 503 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 ASAH2Q9NR71 780 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 CTTNBP2NLQ9P2B4 639 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 UBQLN1Q9UMX0 589 aaKnown RBP10.72□□□□□ -0.69
SS18-221ENST00000582448 NENFQ9UMX5 172 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 AGAP1Q9UPQ3 857 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 HYOU1Q9Y4L1 999 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 VWA8A3KMH1 1905 aa10.72□□□□□ -0.69
SS18-221ENST00000582448 NCANO14594 1321 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 PALMO75781 387 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 MMEP08473 750 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 PRLRP16471 622 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 CD58P19256 250 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 POLR2BP30876 1174 aaKnown RBP10.71□□□□□ -0.69
SS18-221ENST00000582448 CNR2P34972 360 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 PNPLA4P41247 253 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 PXNP49023 591 aaPredicted RBP10.71□□□□□ -0.69
SS18-221ENST00000582448 PON2Q15165 354 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 TPGS2Q68CL5 300 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 ACAD10Q6JQN1 1059 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 CCDC70Q6NSX1 233 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 TOP6BLQ8N6T0 577 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 DDX1Q92499 740 aaKnown RBP10.71□□□□□ -0.69
SS18-221ENST00000582448 C18orf25Q96B23 403 aaPredicted RBP10.71□□□□□ -0.69
SS18-221ENST00000582448 ZFYVE19Q96K21 471 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 FAM84AQ96KN4 292 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 ZMAT2Q96NC0 199 aaKnown RBP10.71□□□□□ -0.69
SS18-221ENST00000582448 CARD6Q9BX69 1037 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 ISCUQ9H1K1 167 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms